Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00948 ATGGCATTCGTTGTAGGTGAAGCTTCTTCTTCTTCTTCTTCTAGATCAGTTCCACGAGTGTTTTTGAGTTTTAGGGGAGAAGACACTCGCAAAGGATTCACTGACCATCTCTACGCTGCACTTGAAAGAAAAGGAATCACAACATTCATGGATGACAAAAACCTTGAGAAAGGACAAGCCATTTCAAAAGGGCTCCTCAAAGCAATTGAAGAATCTATGTTTGCAATCATCATCCTCTCACCAAACTATGCTTCCTCCACTTGGTGTTTGGATGAGATCCAAAAGATTGTTGAGTGTAGCAACAACCTTGATCTTCAGGTTTTGCCGGTTTTCCATGGTGTCGACCCCTCTGATGTGAGGCGTCAAAGAGGAAGCTATAAGGAAGCTTTCATAAGACATGAAGAGAAATTTGGACAACACAGTGACAAGGTTAGAAGATGGAGAAATGCGTTAAAACAAGTTACCAATTACTCTGGGTGGGACTCCAAGGATCGGCATGAGGCAGCACTTGTGGAAATTATTGCTAGACACATACATAAAAAGGTCATTTCAAAATTGCCATCTTGCACTGACAATCTTGTTGGGATTGCTTCAAGGATGAAGGAAGTGAAGAGCCTCATAGGCATGGGGTCTAATGATGTTCGCTTTATAGGCATATGGGGCATGGGTGGCATAGGTAAGACAACTATTGCTAGAGCAGTCCATGAATCAATTCAACAAAATTTTGAGGTTTCTTGCTTTCTTGCCAACGTTAGAGAGCTATCTGAGACTAATGGTTTAGTTCACATTCAAAGAGAACTTGTTTCTAATCTGGATATAAGGAGTGATTTTCGTAACTTGTATGATGGGAAAAAGACAATACAAAACTCTTTATGCAACCAAGCGGCTCTTCTTGTTCTTGATGATGTAAGTGAAATAAGCCAATTGGAGAGTTTGGCTGGGAATAAAGATTGGTTTGGTCCTGGAAGCAGAGTAATAATCACAACCAGAGATAGGCACTTGCTAAGGATACATGAAGTGCATGAAATTTATGAGGTTGGAGGCTTAGTCCAAACTGAAGCCCTTCGTCTCTTTTGTTTGAAAGCCTTTAAACGAGATCAACCTGAAGAAGGGTATTTGGATTTGTCCAGAGAAGTGGTCAAATATAGTGGTGGTCTTCCATTGGCACTTGAGGTATTGGGTTCCTTTCTTTATGGAAGGAGCGTTGATGTTTGGCATAGTGCTGTGAAAAAAATAAAAAGCATTCCACAGGCCAAAATTCTAGATACACTGAAAATAAGTTATGAAGGTTTAGATTCAATGGAGAAGAGTATTTTTCTAGATATTGCCTGTTTCTTCAAAGGAATGAACAGAAATAGTGTATCAAAGATACTAGAAAATTTTGGTTATTATTCCTCAATTGGAATTGAAATTTTGATTGAAAGATCTTTGATAACTGTAGAACGGGGAAGTGATAAGTTGGAGATGCATGATTTGCTTCAAGAAATGGGCAGGAATATTGTTCTTAATGAATCTCCAAACGATCCTGGCAAACGTAGCAGGTTGTGGTCTAAAAAGGACATTGATCATATATTTACAAACAATATGGTAGGTGCCAATTTTTCTACAACTGTTGGATGTTTGGTGTTAGATAAAATAAATATGGGAACCGAAGCAATTCAAAGCATAATTCTAAGCCCATCCAGACCATATGTAGCACATTGGAGCAGTGATGTCTTCTCAAAAACAAGTCAGCTGAAATTTTTGAGTTTATGTCGGGTGCAACTTCCCATTGGCCTCAACTGTCTTCCTAGTTCACTAAAAGCTATTCACTGGATAGGATGTCCTCTGAAGTCTCTGCCCTTTGGAAACCAACCGTATCAAGTTGCTGAAATCAAACTGTGTTTTAGCAGAATTGAACAACTTTGGCCTGGAAAAAAGTTTCTAGGGAAGCTGAAGTACATGGATTTGAGTTATTCCCGGAATCTAAAGCGATTACCCGATCTTTCTGCTGTTCCCAATCTTGACACACTTGATCTTAGACATTGTTCACTCCTTACAGAGGTTCATCCCTCCCTTGTTCACCACAAGAGCCTTGTTCTAATTAATTTAGATAGCTGCAGAAGTCTTAAAACTCTTCCAAGTAAATTGGAGATGAGTTCCCTGAAGGAATTAATTCTTAGTAACTGCTCTAGATTTGAACAACTTCCTGAATTTGGGGGAAGCATGAAACATCTGTCAATGCTTTCTTTAAAAGGAACGGCTATAAGAAAACTACCCACATCACTTGGATGTTTAGTTGGCCTTTCTGAATTGAACTTGGAGAATTGCAAAAATCTTGTTGTCCTTCCAGAGTCCATTCATGGATTGCAGTCCCTCAGAATTCTGAAGGCTTCTGGTTGCTCAAATCTCTGTAGATTACCGGAGGATTTAAAGGAAATGAAGTGTTTGGAGGAACTTTGTGCTACTGAAGTCAGTGCATTATCTTTTGCAGGGGGAAAAGGAACTCCAACTGGACTCAGATTGAGATTGCCACTTTCTGTCTCAAAACTGCCCTTTTTGAGCAGTCTAGATTTAAGTTACTGCTCTCTATCTGAAGAATCATTCCCTGATGATTTTTGTCAGTTCCCTTCACTAGAAGATTTAAATCTAAGTGGCAACAATTTTGTTAGAGTACCAATAAGTATTCATAAACTTTCAAAGCTTAGATATCTTTACCTAAACCATTGCCCAAAGCTTCAATTTTTGCCAAAGCTTCCATCAGAAATATTTGAATTGGAAGCATGCAATTGTGATTCACTGGAAACATTTGAATTCAATCCTTTAAAGACATGCAATATCTTTGAATCACCTGGCCAAGACCGTGGTCAGGTCTTTAGCATGCTGATCACAGGGTGTGAAATTCCATCATGGTTTGACCATCAAGAAGAAGGTAGCTATGTATCAGTCCCACATAATTTCCCTCTAAATGAAAGGGTTGGAATTGCTCTGTGTTTTCTATTCCTATCATCTGAGGCACGCTATGATCCTATAGAATGCTCTTTGGCTGGCCACAAAGGTAATACATTCATCACCCGGAAGCTTTTACGTCCTATGAAGCGAGGTTTTCACCTTTACATTCTTTGTTTGAACAATGATGATTTCAGTAATGAAATTCACGAAGATAATCATTTTAGACTTTTTCATAGATCTAAAGAAAGCCCCTATGCAACATTACAAAAAAAAAGTGGAATTCACAAACACTCTGGTTTCTCTGGACTAAAGCCTAATTATGATTTTCAAGTTGTGAGATCTGGGGCCCGTTTGGTACATAAGCAGGATGTTGAAGATTTAAACAAAATCATTGAGCAAATGCAACAAGAGTCAGTGCTAGTTGAAGTTGACACAGTTAGTTCTTGA 3378 0.3884 MAFVVGEASSSSSSRSVPRVFLSFRGEDTRKGFTDHLYAALERKGITTFMDDKNLEKGQAISKGLLKAIEESMFAIIILSPNYASSTWCLDEIQKIVECSNNLDLQVLPVFHGVDPSDVRRQRGSYKEAFIRHEEKFGQHSDKVRRWRNALKQVTNYSGWDSKDRHEAALVEIIARHIHKKVISKLPSCTDNLVGIASRMKEVKSLIGMGSNDVRFIGIWGMGGIGKTTIARAVHESIQQNFEVSCFLANVRELSETNGLVHIQRELVSNLDIRSDFRNLYDGKKTIQNSLCNQAALLVLDDVSEISQLESLAGNKDWFGPGSRVIITTRDRHLLRIHEVHEIYEVGGLVQTEALRLFCLKAFKRDQPEEGYLDLSREVVKYSGGLPLALEVLGSFLYGRSVDVWHSAVKKIKSIPQAKILDTLKISYEGLDSMEKSIFLDIACFFKGMNRNSVSKILENFGYYSSIGIEILIERSLITVERGSDKLEMHDLLQEMGRNIVLNESPNDPGKRSRLWSKKDIDHIFTNNMVGANFSTTVGCLVLDKINMGTEAIQSIILSPSRPYVAHWSSDVFSKTSQLKFLSLCRVQLPIGLNCLPSSLKAIHWIGCPLKSLPFGNQPYQVAEIKLCFSRIEQLWPGKKFLGKLKYMDLSYSRNLKRLPDLSAVPNLDTLDLRHCSLLTEVHPSLVHHKSLVLINLDSCRSLKTLPSKLEMSSLKELILSNCSRFEQLPEFGGSMKHLSMLSLKGTAIRKLPTSLGCLVGLSELNLENCKNLVVLPESIHGLQSLRILKASGCSNLCRLPEDLKEMKCLEELCATEVSALSFAGGKGTPTGLRLRLPLSVSKLPFLSSLDLSYCSLSEESFPDDFCQFPSLEDLNLSGNNFVRVPISIHKLSKLRYLYLNHCPKLQFLPKLPSEIFELEACNCDSLETFEFNPLKTCNIFESPGQDRGQVFSMLITGCEIPSWFDHQEEGSYVSVPHNFPLNERVGIALCFLFLSSEARYDPIECSLAGHKGNTFITRKLLRPMKRGFHLYILCLNNDDFSNEIHEDNHFRLFHRSKESPYATLQKKSGIHKHSGFSGLKPNYDFQVVRSGARLVHKQDVEDLNKIIEQMQQESVLVEVDTVSS. 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00948 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 442 IPR027417 -
Seca2g00948 1125 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 160 IPR035897 -
Seca2g00948 1125 Pfam Leucine rich repeat 847 903 IPR001611 GO:0005515
Seca2g00948 1125 Gene3D Ribonuclease Inhibitor 551 710 IPR032675 -
Seca2g00948 1125 Pfam NB-ARC domain 204 418 IPR002182 GO:0043531
Seca2g00948 1125 SMART till_3 17 157 IPR000157 GO:0007165
Seca2g00948 1125 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 184 - -
Seca2g00948 1125 Coils Coil 1094 1114 - -
Seca2g00948 1125 Gene3D - 183 343 IPR027417 -
Seca2g00948 1125 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 732 IPR044974 GO:0006952
Seca2g00948 1125 Gene3D - 349 432 IPR042197 -
Seca2g00948 1125 SUPERFAMILY "Winged helix" DNA-binding domain 419 523 IPR036390 -
Seca2g00948 1125 Gene3D Ribonuclease Inhibitor 828 965 IPR032675 -
Seca2g00948 1125 Gene3D Ribonuclease Inhibitor 711 824 IPR032675 -
Seca2g00948 1125 ProSiteProfiles TIR domain profile. 16 182 IPR000157 GO:0007165
Seca2g00948 1125 Pfam TIR domain 20 195 IPR000157 GO:0007165
Seca2g00948 1125 PRINTS Disease resistance protein signature 216 231 - -
Seca2g00948 1125 PRINTS Disease resistance protein signature 383 397 - -
Seca2g00948 1125 PRINTS Disease resistance protein signature 290 304 - -
Seca2g00948 1125 PRINTS Disease resistance protein signature 710 726 - -
Seca2g00948 1125 Gene3D - 18 182 IPR035897 -
Seca2g00948 1125 SUPERFAMILY L domain-like 557 935 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00948 Seca-Chr2 15248133 15253483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00948 12 821 WRKY Transcription Factor Family AT4G12020 32.010 2.14e-108 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00948 - - gmx:100815486 1171.38