Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00942 ATGGCGACGGAAGGAGAGAGAGAAGGAGGAGGAGATGGAGAACAGAACGAGTCCGACGAGTCAACACGGCCCAATGAGGAGGAGTTGGTGGAGGAGATCCAACAAGTCATTGAATCGGTGGTTCAATTCGGCGAGTATCGAAGGACACAGAGGAAGGAGGCTCAAAACCTCGCACGTCGTTTCAAGCTCATGTTACCCCTCATGGAAGACCTCCGTGACCTCCAACAACCCATTCCTCAAAACGGCGTCGCTTGGTTGATCAAACTCAAGGACGCCCTTCTATCTGCCAAGGACTTGTTGAGATTATGCAGCCAAGGAAGCAAGATTCACCTCGCATTGGAGGGTGAGGCGGTTATGATAAAGTTCCAAAGTGTGTATGAAAAATTAAGCCAAGCGTTTGATGGTGTGCCTGGTGATGAATTGGGGATCTCGGATGAAGTCAGAGAACAGCTTGAGCTAATGCACGTGCAACTGAGGCGGGGGAAGAGAAGGACTGATACACAGGACATAGAACTGGCAATGGATATGATGGTGGTATTCTCTGATGAAGATGGTCGTAATGCTGATCGTGCTATTGTTGAAAGGCTTGGAAAAAAGATGGAGCTTCATACTGTTGAGGATCTTGAGGTAGAAACAATGGCTGTTAAGAACCTTGCTACAGAAAGAAAAGGGCAACATGCTGAGAGTACCCAGAGAATAATTGACCTTCTTAACAAATTCAAACGAGTTGCAGGTATGGAAGAAACCAGTGTCCTTCATGATCCTGTTATGCCCAGGATGCTTGGAAGGAGCACGTCTTTGGTCATCCCTCATGAGTTTCTATGCCCAATAACACTAGAAATCATGACAGATCCTGTTATTGTTGCAAGTGGACAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCAAATCCAATCATAACACCTGCCCAAAGACTAGGCAACCTCTGGATCATCTATCCTTAGCACCAAATTGTGCCTTAAAAAACTTGATTTCTGAATGGTGTGAGAGGAACAACTACCAACTACCTAAAAAATATTCAAGTCATGAAAATTGTTCAATTGAAAACAATGAGGAAATTCCATCTTTGGTTGAGAGCCTATCATCTATTCATTTAGAAGAGCAGAGAAAGGCAGTGGAGAAAATACGTATGTTATCAAAAGAAAATCCTGAGAACAGAGTTTTGGTTGCTGATAGTGGAGGAATACCACCATTAGTGCAACTCCTGTCCTATCCAGATTCAAAAATACAAGAGCATGCTGTGACAGCACTTTTAAATTTATCAATTGATGAGGGTAACAAGAAGCTTATATCTAAAGAAGGGGCAATTCCAACTATTATAGAAGTGTTGGAGAATGGGAGTATTGTGGCTAAAGAAAATTCTGCAGCAACTTTATTTAGCTTGTCAATGCTTGATGAGATCAAAGAGATTGTGGGTCAATCAAATGGGTTTCCACCTTTGGTAGAATTGTTGAGGAGTGGGACAGTTAGAGGGAAGAAAGATGCTGCTACAGCTCTTTTCAACTTATCTCTCATCCATGCAAATAAAGGTAGGGCCATTGAAGCTGGCATTGTGCCACCTTTACTTCAATTGCTCAAAGACATGAACTTAGGCATGATTGATGAAGCACTCTCAATTTTGCTACTCCTTGTATCAAATTCAGAAGGAAGACAAGAGATTGGACAACTATCCTTCATTGAAACTCTTGTTGGGTTCATCCGAGAAGGGAGCCCCAAGAACAAGGAATGTGCAGCATCTGTTCTTCTTGAGTTGTGTTCAAGTAACTCATCCTTTATATTGGCAGCACTTCAATTTGGAGTGTATGAGCATTTAATTGAGATCAAAGAAAGTGGAACAAATAGAGCACAGAGGAAAGCAAATGCAATCTTAGAGCTTGTAAGCAAGAGCGAGCAAATTTAA 1923 0.4238 MATEGEREGGGDGEQNESDESTRPNEEELVEEIQQVIESVVQFGEYRRTQRKEAQNLARRFKLMLPLMEDLRDLQQPIPQNGVAWLIKLKDALLSAKDLLRLCSQGSKIHLALEGEAVMIKFQSVYEKLSQAFDGVPGDELGISDEVREQLELMHVQLRRGKRRTDTQDIELAMDMMVVFSDEDGRNADRAIVERLGKKMELHTVEDLEVETMAVKNLATERKGQHAESTQRIIDLLNKFKRVAGMEETSVLHDPVMPRMLGRSTSLVIPHEFLCPITLEIMTDPVIVASGQTYERESIEKWFKSNHNTCPKTRQPLDHLSLAPNCALKNLISEWCERNNYQLPKKYSSHENCSIENNEEIPSLVESLSSIHLEEQRKAVEKIRMLSKENPENRVLVADSGGIPPLVQLLSYPDSKIQEHAVTALLNLSIDEGNKKLISKEGAIPTIIEVLENGSIVAKENSAATLFSLSMLDEIKEIVGQSNGFPPLVELLRSGTVRGKKDAATALFNLSLIHANKGRAIEAGIVPPLLQLLKDMNLGMIDEALSILLLLVSNSEGRQEIGQLSFIETLVGFIREGSPKNKECAASVLLELCSSNSSFILAALQFGVYEHLIEIKESGTNRAQRKANAILELVSKSEQI. 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00942 640 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Seca2g00942 640 Gene3D - 341 639 IPR011989 -
Seca2g00942 640 SUPERFAMILY RING/U-box 268 345 - -
Seca2g00942 640 Pfam U-box domain 269 339 IPR003613 GO:0004842|GO:0016567
Seca2g00942 640 FunFam RING-type E3 ubiquitin transferase 265 342 - -
Seca2g00942 640 SUPERFAMILY ARM repeat 358 633 IPR016024 -
Seca2g00942 640 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 340 IPR013083 -
Seca2g00942 640 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 401 443 IPR000225 GO:0005515
Seca2g00942 640 Pfam Armadillo/beta-catenin-like repeat 390 429 IPR000225 GO:0005515
Seca2g00942 640 Pfam Armadillo/beta-catenin-like repeat 517 548 IPR000225 GO:0005515
Seca2g00942 640 Pfam Armadillo/beta-catenin-like repeat 474 511 IPR000225 GO:0005515
Seca2g00942 640 SMART arm_5 554 594 IPR000225 GO:0005515
Seca2g00942 640 SMART arm_5 472 512 IPR000225 GO:0005515
Seca2g00942 640 SMART arm_5 431 471 IPR000225 GO:0005515
Seca2g00942 640 SMART arm_5 513 553 IPR000225 GO:0005515
Seca2g00942 640 SMART arm_5 390 430 IPR000225 GO:0005515
Seca2g00942 640 CDD RING-Ubox_PUB 270 322 IPR045210 -
Seca2g00942 640 PANTHER U BOX DOMAIN-CONTAINING 51 634 - -
Seca2g00942 640 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Seca2g00942 640 FunFam RING-type E3 ubiquitin transferase 26 139 - -
Seca2g00942 640 MobiDBLite consensus disorder prediction 1 28 - -
Seca2g00942 640 Gene3D - 26 137 IPR036537 GO:0007166
Seca2g00942 640 FunFam RING-type E3 ubiquitin transferase 345 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00942 Seca-Chr2 15186077 15189411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00942 29 640 U-box Gene Family AT5G42340 63.562 0.0 759
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00942 - - gmx:100777362 1006.51