Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00941 ATGAAGGTGGATAGGAAAAAAAAGCATAGGGCAAAAACTCGTGTGAGTTGTGAAGCTAAGCTAAGAATTCGCTTAGATTATAAGACATCTAAATGGAAGGTGGTATCTTTTGTGGAGACTCATAATCATGAGCTTCCTCCTTACAGTTATGTTCATTTATTACCTGCTTATAGAGGCCTAACTGATGCAGATAAAGCTCAAGTAGATAGGTTGCACGCATATGGTGTTAGAACATGCCACATAATGGGATACATGTTAGATCAAAATGGAGGATATTCTTCGCTTGGGTTTTGTAAAAAGGATTTGTATAATTATATTGAACGACGGAAACTTGAAAAGATTAAAGATGGAGATGCACATGCAGCCTTATGTTATATACAAGCAAAGGTTAATAAGAAAGATACTATTCTTGAATTCATTAATAGGTTTGGGCAAGTTTTGAGAGAATATAGGAACAATGAGATGATTGCAGATTTCAAGTCTATGTTTACTCATCCAGTTCTAACTACCTCTCTTCAGAAAATTGAGAGTGATGCGGCCAAAATATTCACATTGGAGATTTTTAGGGAAGTGAAAACTGAGATTGAGCTTGCTGGTGCATTAAATGTAATTGCAAGGGTGGAAAACGGAGATAAGCTGATTTTTAAGATGAACCCTTACGGTAAACCTGGTCATGATATTCAGGTGGTGTATGATGTTGCCAATTCTCAATTTCTATGTGATTGTAGACTGTTTGAGAGTCGTGGAATCCCATGTTGTCATGTAATATGTGCATTGAAAAATGAAAACATGCAATCCATTCCAAGTAGCTTGATTTTGAATCGTTGGACAAAGAAGTGCAAGATTGATCTTATTTCGACATATCAATCAGAGGATGTGGATACTGATGTCATGAAAACTGCCCGTTTAGGGGCTGTTGATGGAGTTTTCCAAAGGTTGGGTTGTATTGTTGTAGAAAAGAGAGAATATTTCAATAATATAATGGAAGATTTGTTGAAGGTGACGAATAAATATGAGATGATAAGGGAAACACGTGCCACACAAACCAACCGTGAAAAGATTGTCAAAGATCCACCAGTTGTGAAAACAAAAGGAGCACCACCGAAAAAAAAGTACGGGAGAAAAAGGAGAAGATGCTCTAAGTGCAATAGACCCAGACATATTAGTAGTTGTCCTGAGCTTCTTGGTAAGGAACAAGAAGACCATAATATGCATGATTCAGGTTCAGAAGACAATGAGGTTAGAGAATTTTGA 1254 0.3684 MKVDRKKKHRAKTRVSCEAKLRIRLDYKTSKWKVVSFVETHNHELPPYSYVHLLPAYRGLTDADKAQVDRLHAYGVRTCHIMGYMLDQNGGYSSLGFCKKDLYNYIERRKLEKIKDGDAHAALCYIQAKVNKKDTILEFINRFGQVLREYRNNEMIADFKSMFTHPVLTTSLQKIESDAAKIFTLEIFREVKTEIELAGALNVIARVENGDKLIFKMNPYGKPGHDIQVVYDVANSQFLCDCRLFESRGIPCCHVICALKNENMQSIPSSLILNRWTKKCKIDLISTYQSEDVDTDVMKTARLGAVDGVFQRLGCIVVEKREYFNNIMEDLLKVTNKYEMIRETRATQTNREKIVKDPPVVKTKGAPPKKKYGRKRRRCSKCNRPRHISSCPELLGKEQEDHNMHDSGSEDNEVREF. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00941 417 MobiDBLite consensus disorder prediction 391 417 - -
Seca2g00941 417 ProSiteProfiles Zinc finger SWIM-type profile. 225 263 IPR007527 GO:0008270
Seca2g00941 417 Pfam FAR1 DNA-binding domain 5 45 IPR004330 -
Seca2g00941 417 MobiDBLite consensus disorder prediction 359 417 - -
Seca2g00941 417 MobiDBLite consensus disorder prediction 367 384 - -
Seca2g00941 417 SMART 26again6 238 265 IPR006564 GO:0008270
Seca2g00941 417 PANTHER OS01G0519700 PROTEIN 132 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00941 Seca-Chr2 15145727 15147634 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca2g00941 FAR1 7.8e-09 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00941 - - ccaj:109792835 254.218