Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00939 ATGTCTCTTGAGTCAGCTCCTTCTTCAGCTGACCATAACAACATCAGGGGAGTTCCAACTCATGGTGGACGCTATGTTCAGTACAATATCTATGGTAACCTCTTTGAGGTCTCCAGAAAGTATGTCCCTCCTATCCGCCCCGTGGGAAGAGGAGCTTATGGTATTGTTTGTGCTGCTGTAAATGCGGAGACACGGGAAGAAGTTGCCATTAAGAAGGTTGGCAATGCATTTGACAACAGAATAGATGCCAAAAGGACCTTACGAGAAATTAAACTTCTTCGGCACATGGATCATGAAAATGTAATTTTAATAAACTTTTTTACTTGCATTCTCAAATTTACTTCACTCATACAGGTGATAGTCCTTAAAGACATTATACGACCACCACAGAAGGAGAACTTCAATGATGTGTACATTGTTTATGAGTTAATGGATACTGATCTGCATCAAATAATTCGTTCCAATCAACCATTGACTGATGATCATTGTCGGTATTTTCTGTATCAATTGTTACGAGGACTCAAATATGTACATTCAGCAAATGTTCTGCACCGTGATCTAAAGCCTAGCAACTTGCTAATGAATGCCAATTGTGATCTTAAGATTGGAGATTTTGGTCTAGCTAGAACTACGTCTGAAACTGATTTCATGACTGAGTACGTGGTTACCCGATGGTACCGCGCTCCAGAATTGCTTCTTAATTGTTCAGAATATACTGCAGCCATTGATATATGGTCTGTTGGTTGCATCCTCGGTGAAATCGCGACAAGACAACCCCTATTTCCTGGGAAAGATTATGTTCATCAGCTCAGATTGATCACAGAGCTCATAGGTTCACCTGATGACACCAGCCTTGGATTTCTACGAAGTGATAATGCTCGTAGATATGTAAGACAGCTTCCACAATATCCGAGGCAACAATTTGCTGCTAGATTTCCCAACATGTCTCCTGGTGCAATTGATTTGTTAGAGAAGATGCTTATCTTCGATCCAAACAGGCGCATTACAGTTGATGAGGCTCTGTGCCACCCATACTTGGCACCTCTCCATGATATTAATGAGGAACCTGTTTGCCCTAGACCTTTTAGTTTTGATTTTGAGCAACCTTCTTTCACTGAAGAAGACATCAAGGAACTCATCTGGAGGGAATCTGTGATGTTCAATCCTGATCCACCTATTTATTAA 1185 0.4101 MSLESAPSSADHNNIRGVPTHGGRYVQYNIYGNLFEVSRKYVPPIRPVGRGAYGIVCAAVNAETREEVAIKKVGNAFDNRIDAKRTLREIKLLRHMDHENVILINFFTCILKFTSLIQVIVLKDIIRPPQKENFNDVYIVYELMDTDLHQIIRSNQPLTDDHCRYFLYQLLRGLKYVHSANVLHRDLKPSNLLMNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIATRQPLFPGKDYVHQLRLITELIGSPDDTSLGFLRSDNARRYVRQLPQYPRQQFAARFPNMSPGAIDLLEKMLIFDPNRRITVDEALCHPYLAPLHDINEEPVCPRPFSFDFEQPSFTEEDIKELIWRESVMFNPDPPIY. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00939 394 SMART serkin_6 42 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00939 394 SUPERFAMILY Protein kinase-like (PK-like) 45 353 IPR011009 -
Seca2g00939 394 Gene3D Phosphorylase Kinase; domain 1 25 105 - -
Seca2g00939 394 FunFam Mitogen-activated protein kinase 27 116 - -
Seca2g00939 394 Gene3D Phosphorylase Kinase; domain 1 113 383 - -
Seca2g00939 394 Gene3D Transferase(Phosphotransferase) domain 1 144 373 - -
Seca2g00939 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Seca2g00939 394 FunFam Mitogen-activated protein kinase 144 373 - -
Seca2g00939 394 Pfam Protein kinase domain 46 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00939 394 ProSiteProfiles Protein kinase domain profile. 42 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00939 394 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 40 347 - -
Seca2g00939 394 CDD STKc_TEY_MAPK 35 389 - -
Seca2g00939 394 ProSitePatterns Protein kinases ATP-binding region signature. 48 72 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00939 Seca-Chr2 15026842 15035143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00939 1 389 MAP Kinase Gene Family AT4G01370 83.590 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca2g00939 Pkinase 1.1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00939 K20600 - gmx:100815697 719.153