Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00930 ATGGCCACCACTCATTTGCTTCTACACTCATCTGGGTCCTCCTTTCTAGCTCAATTTCGTACCTTTCCACCTCAGTTGTCTTCTTCAGTGCTCCCTCATGGAAACAGGCATGGAAGTGCAGTGGTGTCCGTGAAGGCCACAGCTGCTGGGGCTGTGCTGGTGGAGAAGTCTGAGGCTGAGAAGGTCAATAGGCTCAAACAAACCTACAATGAGAAAATTGTTCCCTTGCTCATGGAAGAGTTCTCTTACACCAACATACACCAGCAGGTGCCTAAAATTGAGAAGATTGTGGTTAACTGTGGTATTGGAGATGCTGCACAAAATGCAAAAGGTTTGGAAGCGGCAATTAGTGATCTAGCATTAATCACTGGGCAGAGACCTGTTAAGACTCGGGCCAGGGCTTCCGTTGCCACCTTCAAAATCAGGGAAGGTCAACCTCTTGGGATTGCTGTGACACTTAGAGGAAGTATGATGTACTCATTCCTAGACCGAGTTGTCAACTTGGGACTTCCTAGGACAAGAGATTTCCAAGGTTTGAACTCAAACAGCTTTGATGGGAATGGGAATTTCAACATTGGCATTAAGGACCAGGGTGTTTTCCCAGAGATTAGAGCTGATGTTATTGGTAAGCCAAGGGGAATGGATATCTGCATCACAACAACAGCTAAAACTGATCAAGAAGCACAGAGATTATTGGCTCTTATGGGTATGCCATTCAGAGAGGGAGGTGGTCCTGCTGCTGCCACAGCTCGCAAAAAGAAGTTGAAGTCTCATCATTTTGAGAAATCAAAGGGAAAAGGAAAGAGGTAA 810 0.4593 MATTHLLLHSSGSSFLAQFRTFPPQLSSSVLPHGNRHGSAVVSVKATAAGAVLVEKSEAEKVNRLKQTYNEKIVPLLMEEFSYTNIHQQVPKIEKIVVNCGIGDAAQNAKGLEAAISDLALITGQRPVKTRARASVATFKIREGQPLGIAVTLRGSMMYSFLDRVVNLGLPRTRDFQGLNSNSFDGNGNFNIGIKDQGVFPEIRADVIGKPRGMDICITTTAKTDQEAQRLLALMGMPFREGGGPAAATARKKKLKSHHFEKSKGKGKR. 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00930 269 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 63 242 IPR002132 GO:0003735|GO:0005840|GO:0006412
Seca2g00930 269 Pfam ribosomal L5P family C-terminus 146 239 IPR031309 -
Seca2g00930 269 Hamap 50S ribosomal protein L5 [rplE]. 62 241 IPR020930 GO:0003735|GO:0005840|GO:0006412
Seca2g00930 269 ProSitePatterns Ribosomal protein L5 signature. 119 135 IPR020929 GO:0003735|GO:0005840|GO:0006412
Seca2g00930 269 Coils Coil 267 269 - -
Seca2g00930 269 Pfam Ribosomal protein L5 89 142 IPR031310 -
Seca2g00930 269 MobiDBLite consensus disorder prediction 251 269 - -
Seca2g00930 269 FunFam 50S ribosomal protein L5 61 241 - -
Seca2g00930 269 Gene3D - 56 241 IPR022803 -
Seca2g00930 269 MobiDBLite consensus disorder prediction 242 269 - -
Seca2g00930 269 SUPERFAMILY RL5-like 64 240 IPR022803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00930 Seca-Chr2 14920020 14923419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00930 92 197 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 30.189 2.29e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00930 K02931 - gmx:100818896 422.55