Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00926 ATGGTGTCCCTCAACCCAAACCCACCTCAACCTTTTCAATTCTTTGACCCCATCAACATGGAGGATCTGAATAAGAAGATCCGAAAACCCTATACCATTACCAAGTCCAGGGAGAGCTGGACTGACCAGGAGCACGACAAGTTTCTTGAAGCTCTTCAGCTATTTGACCGTGACTGGAAGAAGATTGAAGCATTTGTAGGTTCAAAAACAGTCATCCAGATAAGGAGTCATGCGCAGAAATATTTTCTGAAAGTTCAGAAGAACGGCACAAGTGAACATGTACCTCCTCCTCGTCCAAAGAGAAAAGCTGCTCATCCATACCCTCAAAAAGCTCCTAAAAATGCTCCTACTGTGTCCCAAGTTACCGGGCCATTGCAATCTTCATCTACATTCACTGAACCACCATACATTTATAGGCCAGACTCGTCATCCATGCTTAGAACTCCAATTAGCAGTGTGCCACTGTCATCTTGGAGTTATAATGTTATGCCACCAGTCAGTCTACCAGGAGTGACAAAAGGGTCAAATGATATGGGGTTGACTCCACAAGCCATTCCTACCAATTACTGCTACAGCAGTAGTACTGAGAGTACTCCAAGGGCTTGGCCAAGTAGCAAACAGACAGATCAAGGTGACCAAGGCAAGCCAGTTGAAGTAATGCCCGATTTTGCCCAAGTCTACAGCTTCATTGGCAGTTTGTTTGATCCAAATGCAACTAATCATCTACTGAAGCTGAAACAGATGAACCCATTAAATATGGAAACTGTATTGCTATTGATGAAAAACCTCTCCATCAATTTAATGAGTCCTGAATTTGAGAACCATAAGAGATTGCTGTCATCATATGATGCTGGTTCAGAAAAGGCAATGCCTGGTAGTCAATACAGCAAATCCCTCACTGATAAATCAGAGAGTGCTGTTCTATCTGCTTAG 933 0.4319 MVSLNPNPPQPFQFFDPINMEDLNKKIRKPYTITKSRESWTDQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKAPKNAPTVSQVTGPLQSSSTFTEPPYIYRPDSSSMLRTPISSVPLSSWSYNVMPPVSLPGVTKGSNDMGLTPQAIPTNYCYSSSTESTPRAWPSSKQTDQGDQGKPVEVMPDFAQVYSFIGSLFDPNATNHLLKLKQMNPLNMETVLLLMKNLSINLMSPEFENHKRLLSSYDAGSEKAMPGSQYSKSLTDKSESAVLSA. 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00926 310 PANTHER SWI/SNF COMPLEX-RELATED 20 268 - -
Seca2g00926 310 MobiDBLite consensus disorder prediction 195 212 - -
Seca2g00926 310 Pfam Myb-like DNA-binding domain 37 82 IPR001005 -
Seca2g00926 310 ProSiteProfiles Myb-like domain profile. 32 82 IPR001005 -
Seca2g00926 310 FunFam protein REVEILLE 6 isoform X1 39 87 - -
Seca2g00926 310 Gene3D - 40 87 - -
Seca2g00926 310 MobiDBLite consensus disorder prediction 86 134 - -
Seca2g00926 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 86 IPR017930 -
Seca2g00926 310 MobiDBLite consensus disorder prediction 113 134 - -
Seca2g00926 310 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Seca2g00926 310 MobiDBLite consensus disorder prediction 284 310 - -
Seca2g00926 310 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 84 IPR006447 GO:0003677
Seca2g00926 310 CDD SANT 39 82 IPR001005 -
Seca2g00926 310 ProSiteProfiles SANT domain profile. 35 88 IPR017884 -
Seca2g00926 310 SMART sant 36 84 IPR001005 -
Seca2g00926 310 MobiDBLite consensus disorder prediction 195 214 - -
Seca2g00926 310 MobiDBLite consensus disorder prediction 291 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00926 Seca-Chr2 14881171 14886267 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca2g00926 Myb_DNA-binding 1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00926 - - gmx:778090 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00926 2 14881171 14886267 Seca2g00926 2 14881171 14886267 ECH
Seca2g00926 2 14881171 14886267 Seca4g11353 4 252179734 252186392 ECH
Seca4g11353 4 252179734 252186392 Seca2g00926 2 14881171 14886267 PCT