Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00919 ATGGAGGAAGATTGGGATCTACATGCGGTGGTTAGAGGCTGCAACTCTTCCACCGTTACCTCCACCACCACCACAGCATCCTCTGTGTCTTCTTCTTCCTCTTCCTCTGGTTTTGGCTCTTGTTACTTGCAGCAACCTGAAGCTAATTCATGTGGGTTTTCTATCTTTGATGGTGCACAACAACAAGGTCAAGTTTTGTCACTTCCTGCATACCCCTTTGAAGCAAAAGGTTCCATTGAAGAGTTGCATGAGCTTTGCAAGCCTTTCTTTTCCAAATCACAGCCTCCTCTGATCTCATTGCAAGCCTCTCCCTTGTCACCATTCTCTTATTCTTCCTCTGCAACACCAAAATCAGCTCAGACACAAGAGAAACACCAGCAGCGGAGTAAACAGTCTCATTCTGTCACCACCCCACGATCTAAAAGAAGGAAGAACCAGCTTAAGAGAGTTTGTCAAGTACCAGTTGAGAATCTCTCATCAGACATATGGGCATGGAGGAAATATGGACAGAAACCCATAAAAGGGTCACCTTATCCAAGGGGATACTATAGATGTAGCAGCTCAAAAGGGTGTTTAGCAAGGAAACAAGTTGAGAGGAACAGATCAGACCCAACAATGTTCATAGTCACCTACACAGCTGAACACAACCACCCTGCTCCTACTCACCGAAATTCTCTTGCTGGTTCCACACGCCAGAAGCCCTTGACACCTCAAACTGGCACCACAAATGAAGATTCTGATAAGGCACTGACAAAACCCACTTCCCCTGCAACCTCAGGGGCAGAGGAAGAGGTTCCAATTCAGGGAGAAAAGTCAGAGAGCAGAGAAGAGAAGGAAGATGTGATGGATGACGAGGAAGAAGATGAATTTGGGTTATCTGATATGGTGTTAACAGATGATTTCTTTGAGAGTTTAGATGAACTGAGTCAACTCACTGGCTCTTCTGTAGTTACTGGAGATTGCTTCATTGATCCCTTTTCAGCTATTGCAATCCCTTCTTGGGTGGCCAATAGTGCTGCCACTGCTGCTGGTGGTAGCTGA 1041 0.4582 MEEDWDLHAVVRGCNSSTVTSTTTTASSVSSSSSSSGFGSCYLQQPEANSCGFSIFDGAQQQGQVLSLPAYPFEAKGSIEELHELCKPFFSKSQPPLISLQASPLSPFSYSSSATPKSAQTQEKHQQRSKQSHSVTTPRSKRRKNQLKRVCQVPVENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLTPQTGTTNEDSDKALTKPTSPATSGAEEEVPIQGEKSESREEKEDVMDDEEEDEFGLSDMVLTDDFFESLDELSQLTGSSVVTGDCFIDPFSAIAIPSWVANSAATAAGGS. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00919 346 SMART WRKY_cls 159 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g00919 346 Gene3D WRKY domain 143 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g00919 346 MobiDBLite consensus disorder prediction 109 151 - -
Seca2g00919 346 MobiDBLite consensus disorder prediction 214 292 - -
Seca2g00919 346 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 311 IPR044810 GO:0003700
Seca2g00919 346 FunFam WRKY transcription factor 22 143 213 - -
Seca2g00919 346 ProSiteProfiles WRKY domain profile. 154 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g00919 346 SUPERFAMILY WRKY DNA-binding domain 157 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g00919 346 Pfam WRKY DNA -binding domain 161 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g00919 346 MobiDBLite consensus disorder prediction 217 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00919 Seca-Chr2 14175900 14177600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00919 1 345 WRKY Transcription Factor Family AT4G01250 46.240 1.44e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca2g00919 WRKY 3.3e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00919 2 14175900 14177600 Seca10g03807 10 78716422 78718038 ECH
Seca2g00919 2 14175900 14177600 Seca2g00919 2 14175900 14177600 ECH
Seca2g00919 2 14175900 14177600 Seca4g11361 4 252330347 252332158 ECH
Seca4g08708 4 207391858 207397887 Seca2g00919 2 14175900 14177600 ECH
Seca4g11361 4 252330347 252332158 Seca2g00919 2 14175900 14177600 PCT