Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00908 ATGTCCTCTCCACACACCTATTTCGCCAACCTTGGCCTTGGCTACTCCATAGCCATAGCCCTCGCTTTTCTCGTTCTCCTCTCTACCCTCATCCTCTCCTCTTACCTCTGTTGCCGTTCCCACCGCAACAACCCTACCAACACCCACAACCCCACAACCAACGACGGCGTCGTTTTGCCACGTGTCATCTTCGTGGCGGAAGACGATGAAGACGAGCAACGCGGCGAAGAAAACGCCGCAGTGGGTCTTGACCAGAATGTCATAAACTCTTACCCCAGGTTCCAGTTTAGCAGGGAAAATAACAACGCTGTTGGACAGAACAACACAACGTGTTCAATTTGTTTGTGTGAATATAAGGATTCTGAGATGCTGAGGATGATGCCTGAGTGTCGACATTTTTTCCACCTTTGTTGCCTTGATTCGTGGTTGAAGCTTAATGGGTCTTGCCCTGTTTGTCGAAACTCACCCCTCCCAACGCCGCTTTCTACGCCGCTTCAAGAGGTGGTGCCGCTTTCTCAGTATGCAGCTGATAGAAGAAGGTGA 543 0.5064 MSSPHTYFANLGLGYSIAIALAFLVLLSTLILSSYLCCRSHRNNPTNTHNPTTNDGVVLPRVIFVAEDDEDEQRGEENAAVGLDQNVINSYPRFQFSRENNNAVGQNNTTCSICLCEYKDSEMLRMMPECRHFFHLCCLDSWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYAADRRR. 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00908 180 Pfam Ring finger domain 110 153 IPR001841 -
Seca2g00908 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 157 IPR013083 -
Seca2g00908 180 SUPERFAMILY RING/U-box 102 157 - -
Seca2g00908 180 PANTHER RING-H2 FINGER PROTEIN ATL67 5 180 IPR044289 GO:0016567|GO:0016740
Seca2g00908 180 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Seca2g00908 180 SMART ring_2 111 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00908 Seca-Chr2 14078103 14078645 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00908 9 172 C3H Transcription Factor Family AT5G07040 40.854 3.37e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00908 - - lja:Lj1g3v2807930.1 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00908 2 14078103 14078645 Seca2g00908 2 14078103 14078645 ECH