Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00907 ATGTCCTCTACCGGTTCTTCATCATCCCCACCCATCATGACTATCATCGATAACCTAGACACATTCACTAGGTTGTTCCTCTTAATCATCTTTCTTGCCCTCTTCATTCGAGTATGTTACGTTTATTTTTTCTCCTACCGTGGCCACAATCGTAACAACACATCAACACAACAAAACAATGATAAAAACACCACCATGGGGCTCCCTATTGATGTCATCAATTCCTATCACACTTTCCCTTACACCAAAGACAACATTGCCACCATTAATTTTGACCATGACACCACATGTTGCATATGTATTTCAGATTATATGGAATCGGAGATGTTGAGGATGATGCCGCAATGTCATCACTATTTTCATCGAGATTGTGTTGATACATGGTTGAAGGTTAATGGGTCGTGTCCCATTTGTAGGAATTCGCCAATGTTGGAAGGTAGTAGTGTGTCTAACTTAGATTGCGTCTAA 468 0.4038 MSSTGSSSSPPIMTIIDNLDTFTRLFLLIIFLALFIRVCYVYFFSYRGHNRNNTSTQQNNDKNTTMGLPIDVINSYHTFPYTKDNIATINFDHDTTCCICISDYMESEMLRMMPQCHHYFHRDCVDTWLKVNGSCPICRNSPMLEGSSVSNLDCV. 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00907 155 SMART ring_2 97 138 IPR001841 -
Seca2g00907 155 Pfam Ring finger domain 96 139 IPR001841 -
Seca2g00907 155 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Seca2g00907 155 SUPERFAMILY RING/U-box 89 141 - -
Seca2g00907 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 143 IPR013083 -
Seca2g00907 155 PANTHER RING-H2 FINGER PROTEIN ATL67 57 143 IPR044289 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00907 Seca-Chr2 14057596 14058063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00907 36 142 C3H Transcription Factor Family AT2G46495 37.383 4.98e-19 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00907 - - ccaj:109814695 171.785