Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00905 ATGAAATTACTAGATCTTGAACTTCACCATAAAATTGAAGTGCAAATTCTCATGGAGTTTCACTACCTTTACATTCTCTCCACAATCCTGCTCTTATATCTGTTTCTTCCATCAATCAACTGCCAACAAGTATACCTTAATACCACTGTCACAGACTGCTCTGACAACCCTTCTGCACCAAAAGGATACCTCTGCAATGGTGCTCAAAAATCATGCACTTCCTTCTTAGTTTTCAGGTCCAAACCTCCCTATGACAACCCTATAAGAATTGCCTACCTTCTTGGTTCTGAAGCATCTAACATAGCCTCAATCAACAAGATCTCAACAAATGACATGATTCCATCCAATAAATCAATCATTGTCCCTGTCTTTTGTTCATGTTCTGGAAATATATATCAGCATAACACCCCTTACACTGTCAACAAGGATGACACCTACTTTATGTTGGTAAATGGAACTTACCAAAGCCTCACCACCTGCCAGGCATTGATGGGTCAGAATTATTATTCTGCTGATAACATTGCAATTGGTGCTGAGCTCACTGTTCCATTACTATGTGCTTGTCCCACCACAAACCAGACGGCAAGAGGGGTCACCTCCTTGCTGGTTTACTCAGTGACGGATGGTGACACCATTAAGTCCATAGGAGAGGCTTATGGTGTTGATGAACAAAGTATGCTAGAGGCCAATGGGTTGCCAGTGCCTCCAAGTGCAAACAGCAGCATGACCATCTTTGCCATGACACCTATCTTAGTTCCTCTCAGAGGCAAAAGTTGCAAAGAGGACCCGGATAGTTTCTATTGTACCTGTTCCCAGGGGATGCTTGCTGATGGAAGCTCCAAGGGACTCAACTGTGATGAATCTGATGGTCAAAAATTTCCTGTCAAATTGGTTGCTTCATTAGGTGTTGGCATTGGTGCAGGCTTTCTGTGTTTGTTTCTTTTGGGTTACAGGTTATATCAATATGTACAGAAAAGGAGGGAAAGTATTCGAAAGGAAACGCTGTTCAGGCAAAACGGTGGCTATTTGTTACAAGAGAAGTTGTCATCTTATGGACATGGAGAAAAGGCAAAGCTTTTTATTGCAGAGGAGCTGCAAAGAGCAACAGATAACTACAACCAGAGTAGGTTTCTTGGCCAGGGTGGCTATGGCATGGTGTACAAAGGAATGTTACCAGATGGAACTATAGTTGCAGTTAAGAAGTCAAAAGAAATTGAAAGGAACCAGATGGAAACTTTTGTTAATGAAGTGGTCATTTTATCACAGATCAACCACAGGAACATTGTGAAACTCTTAGGTTGTTGTCTTGAGACAGAAACTCCTTTGCTAGTCTATGAATTTATTCCCAATGGAACTCTCTCCCAACATATCCATAGAAAAGACCATGAGTCATCCCTTCCATGGGACAGTCGCCTTAGAATTGCATGTGAGGTTGCTGGAGCAGTAGCATATATGCATTTTTCAGCCACTGTTCCCATCTTCCACAGAGACATCAAACCCACCAACATACTCCTGGACAGTAACTACAGTTCCAAAGTGTCAGATTTTGGGACATTAAGATCAGTCCCACAAAATAAGACTCACTTAACCACAGCTGTAGGAGGAACTTTTGGGTATATAGACCCTGAATATTTCCAGTCCAGTCAATTTACAGATAGGAGTGATGTATATAGTTTTGGGGTTGTGCTTGTAGAGCTCATAACAGGGAGAAAACCATTCTTAGAAGAAGAAGAGGGTCAGAATGTAATTGCACAATTCATTTCTTTGATGAAGGAGAATCAGATTTCTAACATTTTAGATGCCAGAGTGGTCAAGGAAGCAAGGAAAGATGACATTCTTGCCATCGCAAATCTTGCAATGAGATGCTTGAGACTTAATGGGAAGAAGAGACCAACAATGAAAGAGGTGTCAGCAGAGCTAGATGCATTAAGAAAGATACAAGATTCCTCACAGATCAACTCTGTTCATGAGTCAGCAATTGATGTAGAATCACTGAAGTACCCCACTAGTGAAGCAGCACAAGATTCCACAGAGGAAAGCTTTATGCTAGTTAACAGGCAGGTCAAACTGAGGTTGGTGTTCTCCACTTGTATTCATACCCTTGCACACATCATTTTGAATGGCCTCTCTTACAGAGGGCTGGGACTTCTCTAG 2154 0.4174 MKLLDLELHHKIEVQILMEFHYLYILSTILLLYLFLPSINCQQVYLNTTVTDCSDNPSAPKGYLCNGAQKSCTSFLVFRSKPPYDNPIRIAYLLGSEASNIASINKISTNDMIPSNKSIIVPVFCSCSGNIYQHNTPYTVNKDDTYFMLVNGTYQSLTTCQALMGQNYYSADNIAIGAELTVPLLCACPTTNQTARGVTSLLVYSVTDGDTIKSIGEAYGVDEQSMLEANGLPVPPSANSSMTIFAMTPILVPLRGKSCKEDPDSFYCTCSQGMLADGSSKGLNCDESDGQKFPVKLVASLGVGIGAGFLCLFLLGYRLYQYVQKRRESIRKETLFRQNGGYLLQEKLSSYGHGEKAKLFIAEELQRATDNYNQSRFLGQGGYGMVYKGMLPDGTIVAVKKSKEIERNQMETFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEFIPNGTLSQHIHRKDHESSLPWDSRLRIACEVAGAVAYMHFSATVPIFHRDIKPTNILLDSNYSSKVSDFGTLRSVPQNKTHLTTAVGGTFGYIDPEYFQSSQFTDRSDVYSFGVVLVELITGRKPFLEEEEGQNVIAQFISLMKENQISNILDARVVKEARKDDILAIANLAMRCLRLNGKKRPTMKEVSAELDALRKIQDSSQINSVHESAIDVESLKYPTSEAAQDSTEESFMLVNRQVKLRLVFSTCIHTLAHIILNGLSYRGLGLL. 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00905 717 FunFam Wall-associated receptor kinase 2 448 662 - -
Seca2g00905 717 SMART LysM_2 83 122 IPR018392 -
Seca2g00905 717 SMART LysM_2 203 253 IPR018392 -
Seca2g00905 717 SMART LysM_2 137 183 IPR018392 -
Seca2g00905 717 CDD STKc_IRAK 378 643 - -
Seca2g00905 717 ProSiteProfiles Protein kinase domain profile. 372 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00905 717 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 119 647 IPR045274 GO:0007166
Seca2g00905 717 Gene3D Phosphorylase Kinase; domain 1 345 447 - -
Seca2g00905 717 Pfam Protein kinase domain 372 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00905 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672|GO:0006468
Seca2g00905 717 Gene3D Transferase(Phosphotransferase) domain 1 448 666 - -
Seca2g00905 717 FunFam Wall-associated receptor kinase 2 343 447 - -
Seca2g00905 717 SMART serkin_6 372 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00905 717 ProSitePatterns Protein kinases ATP-binding region signature. 378 401 IPR017441 GO:0005524
Seca2g00905 717 SUPERFAMILY Protein kinase-like (PK-like) 356 638 IPR011009 -
Seca2g00905 717 Pfam LysM domain 204 234 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00905 Seca-Chr2 14024802 14030078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00905 302 653 Receptor kinase-like Gene Family AT1G16130 55.899 2.29e-134 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca2g00905 Pkinase 2.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00905 - - vun:114186184 1045.42