Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00888 ATGTTCAAATTCTTGAAGGAGGTTGTTGGTGGATCTGGAACCGGCCTCAAGGAGCTCCCTTACACCATCGCCGAACCTTATCCTTCCGCTTGGGGCTCTTGGACTCATTATCGCGGCACCTCCAAGGACGATGGTTCTCCGGTCTCTATCTTCTCTCTTTCCGGTTCCAATGCTCAGGACGGACATTTAGCTGCTGCTCGCAACGGCGTCAAGCGTCTTCGAACTGTCAGGCATCCGAATATCTTGTCATTTCTTCACAGTGCCGAGATTGAAACTTATGATGCCGGTTCTCCCAAGGTCACAATCTATATTGTGACCGAACCTGTTATGCCGTTATCCGAAAAGATCAAAGAGTTAGGTCTTGAAGGTACACAAAGGGATGAGTATTATGCTTGGGGTCTGCATCAAATAGCTAAGGCTGTGAGCTTCTTAAATAATGATTGTAAACTTGTTCATGGTAATGTTTGCTTGGCTAGTGTTGTGGTCACGCCAACTTTGGACTGGAAGCTCCATGCTTTTGATGTTCTATCAGAAATTAATGGGAGTAACGAAGCTTCTTCTGGCCAAATGCTGCAATATGCATGGCTTGTTGGATCACAATACAAACCAATGGAATTGGTAAAATCAGACTGGGATGCAATTAAGAAATCTCCTCCATGGGCCATTGATTCTTGGGGCATGGGTTGCCTAATCTATGAGGTATTCTCTGGTCTGCATCTGGGCAAAACAGAGGAGTTACGCAACACTGTCTCCATTCCCAAGTCTCTGCTTCCAGATTACCAACGGCTATTGAGTTCCATGCCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGTGAATATTTTCAAAATAAGTTGGTAGACACAATACATTTTATGGAAATTCTCAGTTTGAAAGATAGTGTTGAGAAAGACACCTTCTTCCGCAAGCTTCCAAATTTGGCTGAGCAACTTCCTCGCCAGATAGTGTTGAAGAAGTTACTTCCTTTATTAGCTTCTGCCCTTGAATTTGGTTCAGCTGCTGCCCCAGCTCTGACTGCATTGTTGAAAATGGGTTCCTGGCTTTCAGCTGAGGAGTTTAATGTCAAGGTGCTTCCGACAATTGTAAAACTCTTTGCCTCCAATGACCGAGCTATTCGAGTTGGCCTTCTTCAGCATATTGATCAATATGGAGAGTCCTTATCAGCACAAACTGTTGATGAGCAAGTTTACCCTCATGTTGCTACTGGGTTCTCCGATACATCTGCTTTTCTCAGGGAACTGACTCTTAAGTCTGCTAATTCTGGCTCCAAAGTTATCTCAAAGGACCATTTCAGGGTCATTATTGAAACATCTGTCAAAGTTACAGGTTGA 1359 0.4378 MFKFLKEVVGGSGTGLKELPYTIAEPYPSAWGSWTHYRGTSKDDGSPVSIFSLSGSNAQDGHLAAARNGVKRLRTVRHPNILSFLHSAEIETYDAGSPKVTIYIVTEPVMPLSEKIKELGLEGTQRDEYYAWGLHQIAKAVSFLNNDCKLVHGNVCLASVVVTPTLDWKLHAFDVLSEINGSNEASSGQMLQYAWLVGSQYKPMELVKSDWDAIKKSPPWAIDSWGMGCLIYEVFSGLHLGKTEELRNTVSIPKSLLPDYQRLLSSMPSRRLNTSKLIENSEYFQNKLVDTIHFMEILSLKDSVEKDTFFRKLPNLAEQLPRQIVLKKLLPLLASALEFGSAAAPALTALLKMGSWLSAEEFNVKVLPTIVKLFASNDRAIRVGLLQHIDQYGESLSAQTVDEQVYPHVATGFSDTSAFLRELTLKSANSGSKVISKDHFRVIIETSVKVTG. 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00888 452 SMART serkin_6 37 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00888 452 ProSiteProfiles Protein kinase domain profile. 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00888 452 SUPERFAMILY ARM repeat 293 427 IPR016024 -
Seca2g00888 452 Gene3D - 282 446 IPR011989 -
Seca2g00888 452 SUPERFAMILY Protein kinase-like (PK-like) 34 287 IPR011009 -
Seca2g00888 452 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 10 435 - -
Seca2g00888 452 Gene3D Transferase(Phosphotransferase) domain 1 109 281 - -
Seca2g00888 452 Gene3D Phosphorylase Kinase; domain 1 12 107 - -
Seca2g00888 452 Pfam Protein kinase domain 37 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00888 Seca-Chr2 13679123 13690518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00888 70 291 MAP Kinase Kinase Kinase AT5G66850 24.786 2.68e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL1 Seca2g00888 Pkinase 1.1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00888 K08876 - gmx:100789813 805.053