Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00887 ATGGTTTCGCTCTCCCCCAACCCCTTCTTTCCCCTCACTGCAAAAAACGCTTCTTCTTCTCTTTCTCCTTCTACTAGATTCCCACCTCCAAACAAGGCAAATCCACTCTATAAAAACAATAAGCACACTAAGGATCACAGAAAGGTTGTCTGTGCTTGCATCGCTCCTCCGCGCAACTTCAACACCCATGACTCCTCCGCTATTAAATTCAATGGTTCATCCAAATCAGAGCAATTAAACACCGTGCAGGATCATGAGGATGATTCTGGTGTTCTTATTGAATGTAGAGATGTCTACAAGTCTTTTGGGGAAAAGAAAATCTTAAATGGTGTCAGCTTCAAGATCAGGCATGGTGAAGCTGTTGGAATAATTGGTCCCTCTGGGACTGGCAAATCTACAGTTTTGAAGATTATAGCAGGACTTCTTGCTCCAGACAAGGGGGAAGTTTACATTCGAGGTAAAAGGAGAGTTGGTTTGGTAAGTGATGATGAGATAGCTGGTCTTCGGATTGGATTGGTGTTCCAAAGTGCTGCACTTTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTTATATGAAAACTCAGGCATGTCTGAGGACCAGATATCAGAGCTTGTCAAGGAAAGCTTAGCAGCCGTTGGATTGAAGGGAGTTGAGGATCGGCTGCCTTCTGAGTTATCAGGTGGGATGAAAAAGCGAGTTGCTTTAGCTCGATCTATTATTTATGACACGACAAAGGATTCAATCGAGCCAGAGGTGTCATTTTACACTTCTGTTCAGGTGCTATTGTATGATGAACCAACTGCTGGACTTGATCCCATTGCATCTACTGTTGTTGAGGATCTGATTCGCTCTGTGCACATAAAAGGGCGAGATGCAGTTGGAAAACCTGGAAAGATTGCATCTTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAGATTGTTGTTTCTACACAAGGGAAAGATTGTTTGGGAAGGAATGACTCATGAATTTACAACTTCAACGAATCCAATTGTTCAGCAGTTTGCTTCCGGGAGCTTGGATGGTCCTATCAAATATTAG 1086 0.4245 MVSLSPNPFFPLTAKNASSSLSPSTRFPPPNKANPLYKNNKHTKDHRKVVCACIAPPRNFNTHDSSAIKFNGSSKSEQLNTVQDHEDDSGVLIECRDVYKSFGEKKILNGVSFKIRHGEAVGIIGPSGTGKSTVLKIIAGLLAPDKGEVYIRGKRRVGLVSDDEIAGLRIGLVFQSAALFDSLTVRENVGFLLYENSGMSEDQISELVKESLAAVGLKGVEDRLPSELSGGMKKRVALARSIIYDTTKDSIEPEVSFYTSVQVLLYDEPTAGLDPIASTVVEDLIRSVHIKGRDAVGKPGKIASYVVVTHQHSTIKRAIDRLLFLHKGKIVWEGMTHEFTTSTNPIVQQFASGSLDGPIKY. 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00887 361 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 93 352 IPR003439 GO:0005524
Seca2g00887 361 Gene3D - 79 353 IPR027417 -
Seca2g00887 361 Pfam ABC transporter 108 243 IPR003439 GO:0005524
Seca2g00887 361 ProSitePatterns ABC transporters family signature. 228 242 IPR017871 GO:0005524|GO:0016887
Seca2g00887 361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 342 IPR027417 -
Seca2g00887 361 MobiDBLite consensus disorder prediction 15 39 - -
Seca2g00887 361 SMART AAA_5 117 329 IPR003593 GO:0016887
Seca2g00887 361 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 21 361 - -
Seca2g00887 361 CDD ABC_Org_Solvent_Resistant 93 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00887 Seca-Chr2 13662245 13668374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00887 99 345 Calmodulin-binding Proteins AT2G36910 26.255 1.95e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00887 - - gmx:100789283 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00887 2 13662245 13668374 Seca2g00887 2 13662245 13668374 ECH