Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00876 ATGGAATTCGATGCCGCAATTCGAGACCCTCTCCCTCAAGATGCAATGTGGCAAATGAACTTGAGGTCGAGTGAAACAATGGAATCAGGACCTTATCCTGAGCATCCAGGAGAACCAGATTGTTCATATTACATCAGGACTGGCCTTTGTAGATTCGGAGCAACATGTCGATTTAATCATCCTCCTAACAGAAAGCTGGCTATTGCCACAGCGCGGATGAAAGGCGAGTACCCAGAAAGGATAGGGCAGCCAGAATGTCAGTACTACTTGAAAACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAAAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTGAATATTTTAGGCTACCCACTCCGCCCAAATGAGCCTGAATGTGCATATTATTTAAGGACTGGACAGTGCAAATTTGGGAACACTTGCAAATTTCACCATCCTCAACCAAGTAATATGATGCTTTCAATGCGGAGTTCTCCTGTTTATCCTACTGTCCATTCTCCAACTACACCAGGTCAACAGTCATATGCGACAGGAATTACAAATTGGTCTAGTTCATCCTATATTGCCAGTCCACGCTGGCAAGGCCCTTCAAGTTATGCATCCTTAATTCTACCTCAAGGAGTGGTTTCAGTTCCTGGGTGGAGTGCATACAATGTAAGCTCATCCGGTCAAATGGGATCAGACAGCTCACAGCAGACAATGGGAAATGATCAAACCTATGGAACTTCTCGCCAAGGTGAACCAGCAAATGCAGGATCCCAAGGGACTTATTCTCAATTCCGTTCTGGCTCTGTTCCTGTAGGATTCTATGCATTGCAGAGGGAGAGCATATTTCCTGAGAGACCTGATCAGCCTGAATGCCAGTTCTACATGAAGACTGGAGATTGCAAGTTCGGTGCAGTCTGTCGTTTCCATCATCCACGTGAGAGGATTATTCCTGCTCCTGACTGTGTTTTGAGTCCCATTGGCCTTCCTTTACGTCCTGGAGAACCTTTGTGTGTCTTCTATTCACGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGATCACCCAATGGGAATCTTCACCTATAATATATCTGCATCACCTACAGCTGATGCCCCAGGACGGCGTCTGATGGGTTCTTCATCGGGAGCTGCTGCATTAACTTTATCATCAGAAGGACTTGTTGAATCAGGCTCAGCAAAGCCAAGGAGGCTTTCATTATCAGAGACTAGACAGATTCCTTCTGGTGATGATGACATTGATGATGAGGGATAA 1284 0.4556 MEFDAAIRDPLPQDAMWQMNLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKGEYPERIGQPECQYYLKTGTCKFGATCRFHHPKDKAGIAGRVALNILGYPLRPNEPECAYYLRTGQCKFGNTCKFHHPQPSNMMLSMRSSPVYPTVHSPTTPGQQSYATGITNWSSSSYIASPRWQGPSSYASLILPQGVVSVPGWSAYNVSSSGQMGSDSSQQTMGNDQTYGTSRQGEPANAGSQGTYSQFRSGSVPVGFYALQRESIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERIIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNISASPTADAPGRRLMGSSSGAAALTLSSEGLVESGSAKPRRLSLSETRQIPSGDDDIDDEG. 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00876 427 SUPERFAMILY CCCH zinc finger 290 316 IPR036855 GO:0046872
Seca2g00876 427 PANTHER PROTEIN PHOSPHATASE RELATED 19 379 - -
Seca2g00876 427 ProSiteProfiles Zinc finger C3H1-type profile. 126 154 IPR000571 GO:0046872
Seca2g00876 427 Gene3D - 114 161 - -
Seca2g00876 427 FunFam Zinc finger nuclease 2 34 111 - -
Seca2g00876 427 Gene3D - 285 363 - -
Seca2g00876 427 Gene3D - 34 113 - -
Seca2g00876 427 SMART c3hfinal6 80 107 IPR000571 GO:0046872
Seca2g00876 427 SMART c3hfinal6 126 153 IPR000571 GO:0046872
Seca2g00876 427 SMART c3hfinal6 287 314 IPR000571 GO:0046872
Seca2g00876 427 SMART c3hfinal6 333 360 IPR000571 GO:0046872
Seca2g00876 427 SMART c3hfinal6 35 62 IPR000571 GO:0046872
Seca2g00876 427 MobiDBLite consensus disorder prediction 396 427 - -
Seca2g00876 427 FunFam CCCH type zinc finger protein 285 370 - -
Seca2g00876 427 ProSiteProfiles Zinc finger C3H1-type profile. 287 315 IPR000571 GO:0046872
Seca2g00876 427 ProSiteProfiles Zinc finger C3H1-type profile. 36 63 IPR000571 GO:0046872
Seca2g00876 427 SUPERFAMILY CCCH zinc finger 40 63 IPR036855 GO:0046872
Seca2g00876 427 ProSiteProfiles Zinc finger C3H1-type profile. 80 108 IPR000571 GO:0046872
Seca2g00876 427 MobiDBLite consensus disorder prediction 226 263 - -
Seca2g00876 427 SUPERFAMILY CCCH zinc finger 129 154 IPR036855 GO:0046872
Seca2g00876 427 SUPERFAMILY CCCH zinc finger 336 360 IPR036855 GO:0046872
Seca2g00876 427 SUPERFAMILY CCCH zinc finger 84 109 IPR036855 GO:0046872
Seca2g00876 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 37 62 IPR000571 GO:0046872
Seca2g00876 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 83 107 IPR000571 GO:0046872
Seca2g00876 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 289 314 IPR000571 GO:0046872
Seca2g00876 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 129 153 IPR000571 GO:0046872
Seca2g00876 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 335 360 IPR000571 GO:0046872
Seca2g00876 427 ProSiteProfiles Zinc finger C3H1-type profile. 333 361 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00876 Seca-Chr2 13547783 13558399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00876 16 425 C2H2 Transcription Factor Family AT3G02830 63.484 2.44e-180 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca2g00876 zf-CCCH 5.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00876 - - gmx:100786261 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00876 2 13547783 13558399 Seca2g00876 2 13547783 13558399 ECH