Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00871 ATGTATATGGATTATGGACTCAGTTTTGGCCTCCTTGTTGTTGCTTTTTCTGATTCCAGAACTAAAGGGTTTTTGTATTATTTGCAGGATGTTTCTTTGCCTATTCTCAAGGATTCTATCATGGAGGCTCTGAAAGTTTTAATTGATGTGAGAAATCACCCAGTTTTGATTCATTGCAAACGAGGAAAGCATAGAACAGGTTGCCTCGTTGGTTGCTTTAGAAAATTGCAGAATTGGTGTTTGTCTTCTGTGTTTGAGGAGTACCAGCGATTTGCTGGTGTTAAATCCAGGATAACGGATTTAACATTCATAGAAATGTTTGACATCATAAGCCTGAGGCAGTGCCTTTACAGCATCATCTACCAGTACCAAGGTTATGGTTCAAAGAAGCGTCGTTTGTTGTATAAAGAGGAGAATTTACAGAAGCCTCCCCGTCTGGCATCATTTTAG 450 0.3933 MYMDYGLSFGLLVVAFSDSRTKGFLYYLQDVSLPILKDSIMEALKVLIDVRNHPVLIHCKRGKHRTGCLVGCFRKLQNWCLSSVFEEYQRFAGVKSRITDLTFIEMFDIISLRQCLYSIIYQYQGYGSKKRRLLYKEENLQKPPRLASF. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00871 149 PANTHER TYROSINE-PROTEIN PHOSPHATASE 32 120 - -
Seca2g00871 149 Gene3D Protein tyrosine phosphatase superfamily 11 111 IPR029021 -
Seca2g00871 149 ProSitePatterns Tyrosine specific protein phosphatases active site. 57 67 IPR016130 GO:0016311|GO:0016791
Seca2g00871 149 Pfam Tyrosine phosphatase family 32 109 IPR004861 -
Seca2g00871 149 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 29 109 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00871 Seca-Chr2 13469936 13472593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00871 30 148 Protein tyrosine phosphatase (PTP) family AT3G02800 68.067 1.78e-59 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00871 K18045 - gmx:100787713 214.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00871 2 13469936 13472593 Seca2g00871 2 13469936 13472593 ECH