Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00867 ATGAAAGAAGACAACATTAACAACAACAATTGTGATGATGAAATCTATGTTTCTGATTTGAAAAGAGGAGACTTTCAAGGTTTTCCTGCCAAAAGAAGCATTGCTGAGAGAAGGGGTTTCAATTCCAATCCAACAAGGATCAACACAGCACTTTTTCACACAGCACATCCAACTTCAACAACTCCTCCTTTGGGTTCTCCTGTAGCTCAATCACCTTGTCTCACCATACCCCCTGGCATTAGCCCCACTGCATTGCTTGACTCTCCTATCATGCTTCTCAATTCTCAGGCCTTGCCATCTCCCACCACTGGGAGTTTCCTCACGCTGCCAGCTTTCACATCTGAACTTGGGAATATGGATGTGGCCACTGCCTCCTTCAAATTAAAGCCTCAATATGCCAATTTGGATCCTAATTGTTCATCTGCCTACCTTGCTTCTCTAAATCAGGTTTCTAGTAATTACCACATGGTAAAGGGAGGAGATAGAGACAACGGACGAACTGCTAAAGTTCAACGAATATTAGATTTTTCATTCCCAGCAGATTTTCCAAACGGCTATTCTGCAAAAAATAGTGAAGTCCATTCTTACAATGATGTGACAATGGTAGATGATGCTAATAAGGTCGAGATGACAATGTCTCGTTCTGAGGAAGCTAGTGGTGAAAGCACTCTACCTGAAAATCCTATCCATGGTGAGGATATTGGACAACAACTTGCTATAGAAGAACAAAAAGAGCCATTCCATGCAACAGGAGTGGTAAGGACCTCAGAGGATGGTTATAATTGGAGGAAATATGGACAAAAACAGGTTAAAGGTAGTGAATATCCTAGAAGCTACTACAAATGCACTCAACCTAATTGTCAAGTCAAGAAAAAGGTGGAAAGATCCCATGATGGCCAAATAACTGAAATTATTTACAAAGGTACTCATAACCATGCAAAACCAAATTCTAATCGTCGATCATCAGCACTTTCTACTGATGAGATGTCAGAAATTGCTGAAGCTGGTGAAACCAGTGGTAAAGTTGATGCTGATTCAGTTTGGGGAAATATTCAGTTGGGGATGAAAATTGCAAAACACAGTATGGAATGGAAGACTGATGGTCAGGAAAGGACATCCTCAACTTCTGTTGTGACTGAGCTTTCAGATCCTATTTCAACCAAGAAAGGTAAACCTCCATGTATGATTGAATCAGAGGATACTCCAGAGCTTTCTTCTACAAATGCTAGTCATAATGGTGATGAAGATGGAGCCACTCAAGCAATTGTATCACTTGAAGATGATGCTGAAGATGATGAATCAGAGTCAAAAAGAAGGAAGAAGGAAAGCTACACAGTTGAATCAAATTTGTCTTCCAGGGCTGTTCGTGAGCCACGAGTGGTAGTCCAAATTGAGAGTGAAATAGACATACTTGATGATGGTTATCGCTGGCGGAAGTATGGACAAAAGGTTGTCAAAGGAAATCCAAATCCTAGGAGCTACTACAAATGTACAAGTGCTGGATGTACTGTAAGGAAACATGTGGAAAGGGCTTCCCATAATCTAAAATATGTTGTTACTACTTATGAGGGAAAACATAATCATGAAGTGCCCACAGCTAGAACCAACAACCAGATAAGCTCAAGTGATGGTGGCTTACCTCCCAGTGGTGCTAATGGGCTTACATTACCCGGAAGTGCCAGTATCCTAAAGCCTGAAACTCGTCAAACTCTTGCTCCTCATTTTGATAGAAAACCTGAATTTAGCAATGATTTTCTCAGGCATGGTTTGATTGGAAGTTTCAGTAATGATATGAAGTTTGGACCTTCCTCCATGTGCCAAATGAAGTATCATTCCTTGAATAATACCATGCCTTATGGCTCCTATACCACCCCTCAAGCTGGATCTATTTCTCCAATGCTCCCTGATCTTCCAATGCCACTGCCATTGAATCTTCCCTCATCTGGAAATTTTTCTCTAACTGGAATTAACTTTAACTGTGTAAAACCAATGGGTCCTGTCCAGTCTTTCCTTTCAGGGCAGCAGATGAAGAACATTGATACAGGGTTCCTAAGGCCTAAACAAGAGCAGAAGGATGATACTATGTATGGAACATGTATACCCCCTCTTGATCATGCGAATGCTTCACTTAATCCGTCAACATCACAATCCATTTATCAACGTGCCATGCAAAATTTCCCTTCATAA 2187 0.4102 MKEDNINNNNCDDEIYVSDLKRGDFQGFPAKRSIAERRGFNSNPTRINTALFHTAHPTSTTPPLGSPVAQSPCLTIPPGISPTALLDSPIMLLNSQALPSPTTGSFLTLPAFTSELGNMDVATASFKLKPQYANLDPNCSSAYLASLNQVSSNYHMVKGGDRDNGRTAKVQRILDFSFPADFPNGYSAKNSEVHSYNDVTMVDDANKVEMTMSRSEEASGESTLPENPIHGEDIGQQLAIEEQKEPFHATGVVRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCQVKKKVERSHDGQITEIIYKGTHNHAKPNSNRRSSALSTDEMSEIAEAGETSGKVDADSVWGNIQLGMKIAKHSMEWKTDGQERTSSTSVVTELSDPISTKKGKPPCMIESEDTPELSSTNASHNGDEDGATQAIVSLEDDAEDDESESKRRKKESYTVESNLSSRAVREPRVVVQIESEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHNLKYVVTTYEGKHNHEVPTARTNNQISSSDGGLPPSGANGLTLPGSASILKPETRQTLAPHFDRKPEFSNDFLRHGLIGSFSNDMKFGPSSMCQMKYHSLNNTMPYGSYTTPQAGSISPMLPDLPMPLPLNLPSSGNFSLTGINFNCVKPMGPVQSFLSGQQMKNIDTGFLRPKQEQKDDTMYGTCIPPLDHANASLNPSTSQSIYQRAMQNFPS. 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00867 728 MobiDBLite consensus disorder prediction 309 339 - -
Seca2g00867 728 MobiDBLite consensus disorder prediction 530 560 - -
Seca2g00867 728 FunFam WRKY transcription factor 243 316 - -
Seca2g00867 728 Gene3D WRKY domain 243 316 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g00867 728 ProSiteProfiles WRKY domain profile. 251 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g00867 728 MobiDBLite consensus disorder prediction 400 417 - -
Seca2g00867 728 FunFam WRKY transcription factor 57 457 531 - -
Seca2g00867 728 SUPERFAMILY WRKY DNA-binding domain 253 315 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g00867 728 ProSiteProfiles WRKY domain profile. 466 531 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g00867 728 Gene3D WRKY domain 458 524 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g00867 728 MobiDBLite consensus disorder prediction 432 446 - -
Seca2g00867 728 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 184 548 IPR044810 GO:0003700
Seca2g00867 728 MobiDBLite consensus disorder prediction 531 548 - -
Seca2g00867 728 MobiDBLite consensus disorder prediction 362 453 - -
Seca2g00867 728 Pfam WRKY DNA -binding domain 257 312 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g00867 728 Pfam WRKY DNA -binding domain 472 529 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g00867 728 SMART WRKY_cls 256 314 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g00867 728 SMART WRKY_cls 471 530 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g00867 728 MobiDBLite consensus disorder prediction 311 328 - -
Seca2g00867 728 MobiDBLite consensus disorder prediction 368 383 - -
Seca2g00867 728 SUPERFAMILY WRKY DNA-binding domain 464 531 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00867 Seca-Chr2 13424711 13432420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00867 1 534 WRKY Transcription Factor Family AT5G56270 40.608 2.70e-100 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca2g00867 WRKY 9.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00867 K18835 - gmx:100800211 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00867 2 13424711 13432420 Seca2g00867 2 13424711 13432420 ECH