Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00861 ATGGAAGGCTCTATCAGTACTGAACGTCTTGATTTTGGGAAGATGGGATATGGATGCCAGCATTATAGGAGAAGATGCAGGATTCGTGCTCCCTGCTGCAACGAGATCTACCCCTGTCGTCATTGTCATAACGAGGAAACGAGCATGTTGAGGAATCCCTTTGATCGGCATGAACTCGTTCGCCAAGATGTTAAACAAGTTGTTTGTTCAGTTTGTGACACTGAGCAGCCAGTTGCTCAAGTTTGCACAAACTGTGGTGTCAGAATGGGAGAATATTTTTGCAACATCTGCAAATTCTTTGATGATGATACAGAGAAACAACAGTTTCATTGTGATGATTGTGGGATCTGCAGGGTTGGTGGGCAAGAGAATTTTTTCCACTGCAAGAAGTGCGGGTCTTGCTATTCGGTCAATCTGCGTGATAATCACTTATGTGTGGAGAACTCCATGAGGCATCACTGTCCCATTTGTTATGAGTACCTTTTTGACTCATTGAAAGACACTATTGTCATGAAATGTGGTCACACAATGCACTTTGAATGTTACCAAGAGATGATAAAACGTGACAAGTACTCTTGTCCCATATGCTCCAAGTCAGTGGTTGACATGTCTATGATTTGGAAGAGAATTGATCAAGAGATTGAAGCTACTGTCATGCCTGAAGTTTATCGGTACAGGAAGGTAGAGTCCCATTCTTTGAAATGCTTGGCAAATACCATCTTTGTTTATCCCCATTTCATTTCCTCTGTCATTTATTTAACCTTCTCCCAGCAATGGTTTGGATACTATGTAATGACTGCAATGACACAACTGAAGTTTACTTCCACATTGTTGGGCAAAAATGTGGTCACTGCAGTTCATATAATACTCGTGCAATTGCACCTCCGGTTCTTCCTCAATGATCAGATTATTGTGGTTCAAAGAAACAGTCAGACAGAAAATTAA 945 0.4127 MEGSISTERLDFGKMGYGCQHYRRRCRIRAPCCNEIYPCRHCHNEETSMLRNPFDRHELVRQDVKQVVCSVCDTEQPVAQVCTNCGVRMGEYFCNICKFFDDDTEKQQFHCDDCGICRVGGQENFFHCKKCGSCYSVNLRDNHLCVENSMRHHCPICYEYLFDSLKDTIVMKCGHTMHFECYQEMIKRDKYSCPICSKSVVDMSMIWKRIDQEIEATVMPEVYRYRKVESHSLKCLANTIFVYPHFISSVIYLTFSQQWFGYYVMTAMTQLKFTSTLLGKNVVTAVHIILVQLHLRFFLNDQIIVVQRNSQTEN. 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00861 314 ProSiteProfiles Zinc finger CHY-type profile. 12 87 IPR008913 GO:0008270
Seca2g00861 314 SMART ring_2 154 196 IPR001841 -
Seca2g00861 314 Pfam CHY zinc finger 19 99 IPR008913 GO:0008270
Seca2g00861 314 SUPERFAMILY Zinc hairpin stack 90 147 IPR037275 -
Seca2g00861 314 ProSiteProfiles Zinc finger RING-type profile. 154 197 IPR001841 -
Seca2g00861 314 ProSiteProfiles Zinc finger CTCHY-type profile. 89 153 IPR017921 -
Seca2g00861 314 CDD RING-H2_Pirh2-like 153 197 - -
Seca2g00861 314 SUPERFAMILY RING/U-box 153 206 - -
Seca2g00861 314 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 13 235 - -
Seca2g00861 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 237 IPR013083 -
Seca2g00861 314 SUPERFAMILY CHY zinc finger-like 16 88 IPR037274 GO:0008270
Seca2g00861 314 Pfam Ring finger domain 153 196 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00861 Seca-Chr2 13364493 13368291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00861 11 226 C2H2 Transcription Factor Family AT3G18290 38.914 6.11e-45 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00861 K10144 - gmx:100792038 456.447