Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00858 GTGCCCGAAACCGAACTCTGTTCTCTGTTCTTTTTATTCTTCTCTGTTTCTCTCTTTCTCTTCTTTCCCTATCGCTCTTTCTCCCCTACAAGCACCGAGTCACAGACTCACCGATCTCTCGATTCTTTTTCATCTTGGTTTATGAGCTCGAAGGAGAGACCCACTCTTGGTGGCACGCGGATTAAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTGGAACTTATTGCTAAGAGCATTGAATCTTCTGACCTTAACTTCTCAAGATACGGCGACACCTTTTTCGAGGCAAGCTTCTTAAACCAGCAGAGAAGTTTTATTGATTCTTTGTTGATTTTAGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAGGGGGAACGCCATCCTTACTCTATAATAGAGTGTGAGCCGACGCGTGAAGTCATCTTACCATCTGTAATCTACATTCAAAAGATTTTACGGAGAAGGCCATTCCTCATCAAGAACCTTGAAAATGTCATGCGAAGATTCCTTCAGTCCTTGGAGTTTTTCGAGGAAAATGAGAGGAAGAAGTTGGCAATCTTCACCGCACTTGCATTCTCCCAGAAGCTATCTGGTCTCCCACCAGAGACTGTGTTCCAACCACTTCTTAAAGATAATCTTGTGGCCAAAGGGATAGTTCTGACATTTATAACCGACTTCTTTAAGGAGTATCTGATTGACAACAGCCTTGATGATCTTATTTCAATTCTGAAACGGGGAAAAGTAGAGGATAATCTTTTGGACTTTTTCCCCCCTACAAAAAGATCTAATGAGTCTTTCTCTGAGCATTTCAGCAAGGAAGGTCTGGTGGCCTTGGTGGAGTATAATGACAAGAAAATATTTGAGGTGAAACTTAAGGAAATGAAGTCTGCTTTAACAACACAAATAACTGAGGAGGCTGATATATCTGAAGTCATTGAGACTGTCAAGGTGCGAGTTAGAGATGCTAAATTGCCAGACATTGAGGTTGTGCGGGTCCTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCAGGGAAAAACCAGCAACAGAATGCAAATTCAGCCTTGCGCCAGGTAAAAACTTGGGCAGAACTGCTGAATACATTCTGCACCAGTGGGAAACTTGAGCTGGAACTGATGTACAAAGTACAGATGCAATGCTATGAGGATGCTAAACTGATGAAGCTGTTCCCTGAGATTATTAGATCTCTTTATGACCAGGATGTGCTTGCTGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACACCAAGGGCAGGCAAACCTTTGTGAAGGCCCTGGAACCCTTTGTTAATTGGCTGGAGGAGGCTGAAGAAGAGGAATAA 1428 0.4363 VPETELCSLFFLFFSVSLFLFFPYRSFSPTSTESQTHRSLDSFSSWFMSSKERPTLGGTRIKTRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKSIESSDLNFSRYGDTFFEASFLNQQRSFIDSLLILVVFTGGRTQPGTTKPDEGERHPYSIIECEPTREVILPSVIYIQKILRRRPFLIKNLENVMRRFLQSLEFFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGIVLTFITDFFKEYLIDNSLDDLISILKRGKVEDNLLDFFPPTKRSNESFSEHFSKEGLVALVEYNDKKIFEVKLKEMKSALTTQITEEADISEVIETVKVRVRDAKLPDIEVVRVLWDVLMDAVQWSGKNQQQNANSALRQVKTWAELLNTFCTSGKLELELMYKVQMQCYEDAKLMKLFPEIIRSLYDQDVLAEDTILHWFRKGTNTKGRQTFVKALEPFVNWLEEAEEEE. 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00858 475 SMART 542_3 389 474 IPR003307 GO:0005515
Seca2g00858 475 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 49 475 - -
Seca2g00858 475 CDD W2_eIF5C_like 280 468 IPR043510 -
Seca2g00858 475 SUPERFAMILY ARM repeat 317 472 IPR016024 -
Seca2g00858 475 FunFam ARM repeat superfamily protein 307 475 - -
Seca2g00858 475 ProSiteProfiles W2 domain profile. 310 475 IPR003307 GO:0005515
Seca2g00858 475 Gene3D - 306 475 - -
Seca2g00858 475 Pfam eIF4-gamma/eIF5/eIF2-epsilon 402 475 IPR003307 GO:0005515
Seca2g00858 475 Coils Coil 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00858 Seca-Chr2 13135122 13140372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00858 364 471 Eukaryotic Initiation Factors Gene Family AT2G34970 32.727 1.90e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00858 - - gmx:100782537 766.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00858 2 13135122 13140372 Seca2g00858 2 13135122 13140372 ECH