Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00853 ATGGCCAATCACAAGTTACTACTCTTTTGTGCAGTGTCACTTTACATGCTTTTGTTGGGTCATTGGATCTTTGTTGAAGCTGCCCCTGCAGGCTCTCTCATCACACAACTCCCTGGCTTTGATGGCAATTTCCCCTCCAAACACTACTCAGGGTATATAAGTATTGATGGAAATGTTGAGAATGGGAAGAACCTGTTCTATTACTTTGTTAGTTCAGAGAGGAATCCAGGGAAGGACCCAGTTGTTCTATGGCTAAATGGTGGACCTGGGTGCTCCAGCTTCGATGGCTTCGTTTATGAACATGGACCATTCAACTTCGAGGCTCCAAAAACAAAAGGGAATCTACCCAATTTGCATATCAATCCTTACAGCTGGTCCAAGGTTTCCAACATGATATATTTAGATTCCCCTGCGGGTGTTGGCCTCTCTTACTCAAAGAACTCAAGCAAATATGTTACAGGGGACCTACAAACTGCCTCTGATACCCATGCTTTCCTCTTAAAGTGGTTTGAGCAATTTCCAGAATTCCTAGCTAATCCATTTTATATTTCTGGGGAGTCTTATGCTGGAGTTTACGTGCCCACTCTAGCTTTTGAAGTTGTAAGAGGAATCCGGAGCGGTAGAAAGCCCGTGATCAATTTTAAGGGTTATATGGTTGGAAATGGTGTCACGGACGAAATATTTGACGGCAATGCTTTTATCCCATTTGTGCATGGGATGGGCCTCATCTCCAACACTATCTATGAGGAAGTAGAATCTTCTTGCAAAGGAAACTACTACAATTCAGACTCTCTGGATGAGAATGATCTATGCAATAAGAAACTGGAAAAAGTTTATAGGGCTATTGATGGGCTTAACGTGTACAATATACTAGAGCCATGCTACCATGTCCCTGAAGGTGAAGCAACCAAAGGAAACGGAAGCTTACCATTGAGTTTTCAACAATTAGGGGTTACAGAGAGGCCTCTCCCAGTGAGAAAGAGGATGTTTGGTAGAGCTTGGCCCTTTAGAGCACCAGTCAGAGCTGGCCCTGTTACATTGTGGCCCCAATTGGCTGAAACGAGGCATGTCGCCTGTGTTAATGATGAAGTAGCAAGCTCATGGTTAAACAATGATGCAGTCAGAAAAGCCATTCATGCTGAACGGGAAAGTGTGGCTGGTCTGTGGGAATTATGTACCATTAGGATATCATACGATCACAATGCTGGAAGCATGATTCCTTACCATAAGAACCTAACCATGTTAGGCTATCAAGCACTTATTTTCAGTGGCGACCATGATATGTGTGTACCATTTACTGGAAGTGAAGCTTGGACTCAATCTCTGGGATATAAGATTGTGGATGAATGGAGACCATGGAGATCAAATAACCAAGTTGCTGGGTACAATATTAATGCTCTCTCTCACTATTCCAAATATACCTACGAAATTATAGTACTTGCCTTTTGTAAAATTTTTCAATTAGCATGTATGAAGCCCCTAAAAAATTAA 1491 0.4232 MANHKLLLFCAVSLYMLLLGHWIFVEAAPAGSLITQLPGFDGNFPSKHYSGYISIDGNVENGKNLFYYFVSSERNPGKDPVVLWLNGGPGCSSFDGFVYEHGPFNFEAPKTKGNLPNLHINPYSWSKVSNMIYLDSPAGVGLSYSKNSSKYVTGDLQTASDTHAFLLKWFEQFPEFLANPFYISGESYAGVYVPTLAFEVVRGIRSGRKPVINFKGYMVGNGVTDEIFDGNAFIPFVHGMGLISNTIYEEVESSCKGNYYNSDSLDENDLCNKKLEKVYRAIDGLNVYNILEPCYHVPEGEATKGNGSLPLSFQQLGVTERPLPVRKRMFGRAWPFRAPVRAGPVTLWPQLAETRHVACVNDEVASSWLNNDAVRKAIHAERESVAGLWELCTIRISYDHNAGSMIPYHKNLTMLGYQALIFSGDHDMCVPFTGSEAWTQSLGYKIVDEWRPWRSNNQVAGYNINALSHYSKYTYEIIVLAFCKIFQLACMKPLKN. 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00853 496 ProSitePatterns Serine carboxypeptidases, serine active site. 183 190 IPR018202 GO:0004185
Seca2g00853 496 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 464 IPR001563 GO:0004185|GO:0006508
Seca2g00853 496 Pfam Serine carboxypeptidase 38 464 IPR001563 GO:0004185|GO:0006508
Seca2g00853 496 SUPERFAMILY alpha/beta-Hydrolases 34 464 IPR029058 -
Seca2g00853 496 FunFam Carboxypeptidase 27 316 - -
Seca2g00853 496 Gene3D alpha/beta hydrolase 27 315 IPR029058 -
Seca2g00853 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 169 194 IPR001563 GO:0004185|GO:0006508
Seca2g00853 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 134 144 IPR001563 GO:0004185|GO:0006508
Seca2g00853 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 394 407 IPR001563 GO:0004185|GO:0006508
Seca2g00853 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 133 IPR001563 GO:0004185|GO:0006508
Seca2g00853 496 Gene3D - 356 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00853 Seca-Chr2 13050258 13057069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00853 364 478 Calmodulin-binding Proteins AT2G22960 46.957 2.22e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00853 K16296 - gmx:100790895 808.905