Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00848 ATGTGTGGGATATTTGCGTATCTGAATTATAACGTGAAAAGAGAGAGGAGATACATTTTGCAGGTTTTGTTCAATGGCTTGAGACGGTTAGAATATCGTGGTTACGATTCCGCTGGAATCGCCATCGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTGTTCTCAACCTCAATGCTCCTCCAATTCCGATTCAACTTCTTCTCCTTCTCTTGTCTTCCGCCAAGAAGGAAACATCGAGTCTCTCGTGAAATCCGTCTACCAAGAAGTTGGTGAGATAGAATTGAACTTGGAGGAATGTTTCTGCACTCATGCGGGAATTGCTCACACGCGTTGGGCCACTCATGGAGAGCCTGCTCCAAGGAACAGTCATCCTCAAACCTCTGGTCCTGGCAATGAATTCTTGGTTGTTCATAATGGAGTTATTACTAATTATGAGGTTTTGAAGGAAACACTAGTCCGACATGGCTTTACCTTTGAATCTGAAACGGACACAGAAGTCATTCCCAAGCTTGCCAAGTATGTTTATGACAAAGCAAATGAAGCAGCAGGTGGTCAGGTTGTTACCTTCAGTCAAGTTGTTCTGGAAGTTATGAGACATCTTGAAGGAGCCTATGCCCTTATTTTCAAAAGTCTACATTATCCTAATGAATTGATTGCTTGCAAGCGCGGTAGCCCACTGCTCCTAGGTGTTAAAGAATTGACAGAAAATAAGGAAAATGGTTCCGCATTTGAGGATAACAAACTCCTATCAAAAGATGGACAGCCAAAAGAACTGTTCTTGTCTAGTGATGCCAATGCTGTGGTTGAGCATACAAAGAAAGTGCTGGTTATTGAGGATGGTGAAGTTGTTCATCTCAAGGATGGTGGGGTTTCTATTTTGAAGTTTGAGAATGACATAGGAGAACATGGCGCTTCTCTTTCCAGAACTTCTTCAGTGCGACGTGCATTGTCTGTTCTTGAGATGGAGGTTGAGCAAATAAATAAAGGACATTATGAGCATTATATGCAGAAGGAAATTCATGAGCAACCTGAGTCTCTAACAACCACAATGAGGGGGAGGCTTATACATCAAGGATCTAGCAAATCCAAGTCTGTTCTATTGGGTGGATTGAAGGATCACCTCAAAACCATTAGGCGAAGTAGAAGAATAGTTTTCATTGGCTGTGGTACAAGTTATAATGCTGCTTTGGCGGCTAGACCCATCTTGGAAGAACTTTCTGGTATTCCTGTTACAATGGAAATTGCTAGTGATCTATTGGATCGGGAGGGACCAATATACCGAGAAGATACAGCCGTTTTTGTTAGTCAATCTGGTGAAACTGCAGACACTTTACTTGCACTGCAATATGCTTTAGACAATGGTGCATTATGTGTTGGGATAACAAACACTGTTGGTAGTGCAATAGCAAGGAATACACATTGTGGTGTTCATATAAATGCTGGTGCGGAGATTGGTGTGGCAAGTACCAAGGCATACACAAGCCAAATAGTAGTGATGGCCATGTTGGCTCTTGCAATAGGAGGCGATACAATTTCCAATCAAGCAAGGCGAGAAGCCATTATAGATGGTCTTTTTGACCTGCCGAATAAAGTCCGAGAGGTGCTAAAGCTTGATGAGGAGATGAAGGAACTGGCAAAGCTATTGATTGCTGAGCAGTCTCTTCTTGTCTTTGGGAGAGGATACAACTATGCAACTGCTCTGGAGGGAGCTTTGAAAGTAAAGGAAGTGGCACTTATGCATAGTGAAGGGATACTTGCTGGTGAAATGAAGCATGGCCCTTTGGCATTAGTGGATGAAAATCTTCCAATTGTTGTTATAGCTACTCATGACGCTTGCTTCAGCAAACAGCAGTCTGTTATTCAGCAACTTCATGCCCGCAAAGGTCGCCTGATAGTTATGTGTTCAAAAGGGGATGCTGCTTCTGTGTGCCCTGGTGAATCGTGCAGGGTCATTGAAGTTCCACAGGTTGTGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAGGTATTTTTACAACCCTTTTTGACCTCTTTTACTGCTATATTTTATCCTTACAACATTACTACATTTGACACGAGAGAAATTTTTTAA 2109 0.4215 MCGIFAYLNYNVKRERRYILQVLFNGLRRLEYRGYDSAGIAIDSSSSSSSSSSSSSCSQPQCSSNSDSTSSPSLVFRQEGNIESLVKSVYQEVGEIELNLEECFCTHAGIAHTRWATHGEPAPRNSHPQTSGPGNEFLVVHNGVITNYEVLKETLVRHGFTFESETDTEVIPKLAKYVYDKANEAAGGQVVTFSQVVLEVMRHLEGAYALIFKSLHYPNELIACKRGSPLLLGVKELTENKENGSAFEDNKLLSKDGQPKELFLSSDANAVVEHTKKVLVIEDGEVVHLKDGGVSILKFENDIGEHGASLSRTSSVRRALSVLEMEVEQINKGHYEHYMQKEIHEQPESLTTTMRGRLIHQGSSKSKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSGIPVTMEIASDLLDREGPIYREDTAVFVSQSGETADTLLALQYALDNGALCVGITNTVGSAIARNTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISNQARREAIIDGLFDLPNKVREVLKLDEEMKELAKLLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPIVVIATHDACFSKQQSVIQQLHARKGRLIVMCSKGDAASVCPGESCRVIEVPQVVDCLQPVINVVPLQVFLQPFLTSFTAIFYPYNITTFDTREIF. 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00848 702 Gene3D - 537 676 - -
Seca2g00848 702 ProSiteProfiles SIS domain profile. 548 693 IPR001347 GO:0097367|GO:1901135
Seca2g00848 702 ProSiteProfiles SIS domain profile. 377 516 IPR001347 GO:0097367|GO:1901135
Seca2g00848 702 Pfam Glutamine amidotransferase domain 107 212 - -
Seca2g00848 702 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 2 298 IPR029055 -
Seca2g00848 702 CDD SIS_GlmS_GlmD_2 543 676 IPR035490 -
Seca2g00848 702 Gene3D - 333 536 - -
Seca2g00848 702 Pfam SIS domain 552 677 IPR001347 GO:0097367|GO:1901135
Seca2g00848 702 Pfam SIS domain 381 508 IPR001347 GO:0097367|GO:1901135
Seca2g00848 702 FunFam Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 2 314 - -
Seca2g00848 702 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 2 292 IPR017932 -
Seca2g00848 702 CDD SIS_GlmS_GlmD_1 386 511 IPR035466 -
Seca2g00848 702 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 309 IPR029055 -
Seca2g00848 702 MobiDBLite consensus disorder prediction 45 73 - -
Seca2g00848 702 FunFam Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 333 555 - -
Seca2g00848 702 SUPERFAMILY SIS domain 332 676 IPR046348 GO:0097367|GO:1901135
Seca2g00848 702 PANTHER GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING 1 676 - -
Seca2g00848 702 CDD GFAT 2 289 IPR047084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00848 Seca-Chr2 12931466 12938318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00848 109 233 PRT Gene Family AT4G38880 29.457 2.44e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00848 K00820 - gmx:100779312 1192.95