Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00830 ATGGGTATGGCCTTCATCAACGTACATGGTTTTGCAGTTTACTTGGGAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTACGATTTGGCAGCACTAAAATACTGGGGAACAACTACTACAACAAATTTTCCTATTAGCCACTATGAAAAGGAGTTGGAAGAAATGAAGCATATGACCCGGCAAGAGTACGTTGCATCATTGAGAAGGAAGAGTAGTGGATTTTCTCGCGGTGCATCTATTTATCGAGGAGTAACGAGACATCATCAACATGGTAGATGGCAAGCAAGGATTGGAAGAGTTGCTGGCAACAAAGATCTCTACTTGGGAACTTTCAGCACACAAGAAGAGGCAGCAGAGGCATATGATGTTGCAGCCATAAAATTCAGAGGACTGAGTGCAGTTACAAACTTTGACATGAGCAGATATGATGTTAAGAGCATACTTGAAAGCAGCACTTTACCAATTGGTGGTGCTGCTAAGCGTTTGAAGGATATGGAACAAGTTGTGGAACTGAGTGTGGATGGCCATAGGACAACAGATATTAATGAAGATTCCCATTTAACTGATGCCATCAATGTTAACTATGGTGCAGCACCAATCACACATCATCATCATCATGCTAATTGGCATGCTCTTGCATTCCAATCTCAACCTCCTCAGCCTTGTAATACTAGCATCATGCATTACCCTTATGGACAAAGGCTTTGGTGCAAGCAAGAACAAGATTCTGATGCATCCCACACTTTCTCAGATATTTATCAACTACAGTTAGGGAATAACAACAACAACAATAACATCCACAATTTCTTTCAGTCAAATAATTCTGGTGGGTTGCACAGTATCATGAGTATGAGCATGGACTCTGCTTCTATGGATAATAGCTCTGTTGTTTATGGTGGTGACTATGTGATTCCTATGGGAACTACTTCTACTACTGTTATTGCAAATGATGGTAACCAAAATCAAAGAAGCAATAATGGTTTTGGTGAGGCTAGTGAGATAAAGGCACTTGGTTATGAAAGTGTTTATGGTTCTGCTTCTACTGATAATCCTTATCAAGCACATGCAAGGAACTTGTATTATCTTTCTCAACAACAACAATCTTCTATGGATCATCATGCAGTTAAGGCTAGTGCATATGATCAAGGTTCCTCTTGCAATAATTGGGTTCCAACTGCAATTCCAACTCTTGCACCAAGGCCTAACAATGTGGCTCTTTGTCCACCTTTCACTTTATTGCATGAATGA 1251 0.4045 MGMAFINVHGFAVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKSILESSTLPIGGAAKRLKDMEQVVELSVDGHRTTDINEDSHLTDAINVNYGAAPITHHHHHANWHALAFQSQPPQPCNTSIMHYPYGQRLWCKQEQDSDASHTFSDIYQLQLGNNNNNNNIHNFFQSNNSGGLHSIMSMSMDSASMDNSSVVYGGDYVIPMGTTSTTVIANDGNQNQRSNNGFGEASEIKALGYESVYGSASTDNPYQAHARNLYYLSQQQQSSMDHHAVKASAYDQGSSCNNWVPTAIPTLAPRPNNVALCPPFTLLHE. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00830 416 SUPERFAMILY DNA-binding domain 80 141 IPR016177 GO:0003677
Seca2g00830 416 CDD AP2 13 47 IPR001471 GO:0003700|GO:0006355
Seca2g00830 416 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 11 226 - -
Seca2g00830 416 Pfam AP2 domain 81 131 IPR001471 GO:0003700|GO:0006355
Seca2g00830 416 FunFam AP2-like ethylene-responsive transcription factor 80 141 - -
Seca2g00830 416 ProSiteProfiles AP2/ERF domain profile. 1 45 IPR001471 GO:0003700|GO:0006355
Seca2g00830 416 Gene3D AP2/ERF domain 4 47 IPR036955 GO:0003700|GO:0006355
Seca2g00830 416 Gene3D AP2/ERF domain 81 141 IPR036955 GO:0003700|GO:0006355
Seca2g00830 416 SUPERFAMILY DNA-binding domain 5 47 IPR016177 GO:0003677
Seca2g00830 416 CDD AP2 80 141 IPR001471 GO:0003700|GO:0006355
Seca2g00830 416 ProSiteProfiles AP2/ERF domain profile. 81 139 IPR001471 GO:0003700|GO:0006355
Seca2g00830 416 SMART rav1_2 81 145 IPR001471 GO:0003700|GO:0006355
Seca2g00830 416 SMART rav1_2 2 51 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00830 Seca-Chr2 12532949 12535958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00830 75 212 AP2-EREBP Transcription Factor Family AT5G17430 29.452 1.19e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca2g00830 AP2 9.7e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00830 K09285 - gmx:100797584 545.814