Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00815 ATGTGCTCCAACACCTTCTTTTCCTTCTTCCTCCATCGCCACTTTTCCATCACCACAAAGTTCCCAAACCTCTCTAAGATCCCCATCAGGCACAGAGACTTTGTTGTTCGTGAAGCCCAGAAGGCCCTCACTGATTACCTCCATGGCACCAGGTGCTTGCCTTTCACCTATGCAGAACACATGGGCAACAACACCCTTCGTTCCCTCATCAACCTCATTGAAAAGGTAGAATTTTCCGCTTCCACTTTCTCCAAAAGCTTTCAGAGGGTTCTTAGGTACCACCCCGTTAACGAATTTGAAGTCTTTTTTGAAAGCATAGGCATAGATTACAACCTGGTTTCTGGGTTGTTGCCTGATGACAAGGTTTTCTTTTCCCAAGATGGGACCCTTCTTGATGCTGCTCGTGCACTTTCTGATTTTGGGTTTCCGTGGGAGAAGTTGGGTGTGTTGTACATGGAGAGAAGCTCCATATTTGGGAGAAATGCTGCAGAGTTGAAATCAAGGCTTAGTGAGTTTAAAGGGTTTGGTTTTGGTAATGTTGAAATCATTGGCATTTGTTTGGCTTTCCCTTTTGTTCTGAGTGAGGAAGGTCAAGTAGGTGTTGTAATTGATAGGTTGTTCAATGATCTGAGGTTGATATTTTTGGATTTTGCTTTGGCAAGGTCTATTGAGGGAAATGTGGATTCTTGGCATGAGGTGTGTAGGAAATTGCGAGTGTTTTTTGATTTAAATGGTTGGAATGGCAAGTTAGGGGAGCTCATGGGAAGGAATAAGAGTATCTTTCTTGAACACAAAGAAGAGGAGTTAGTTAATAAAGTAGAGTATTTCTGTAGATTTGGTGTAAAGAAGGAGGAAGTGGCTCAGTTGATTCTACAATGCCCTGAATTGATAAATTTTGATTTGGAGAATCCAGTGATTAATGTATTGAAACTGTTGAAACACTTTGGCCTGAGCTCTGAAGATCTGAAGGATGTCAGTGAAAATTTTGCTCATGTGTTGGGAACAAATAAAATGGTTAATCTACCTAATGTAATGAGGGCCATTGGTTTACAAGAGTGGTTCTTCAATAAAATCAAGGGTGGACATCATCAGTTGTTAGCGGATTATATCACAAGCTATCCTAATGAAGACCAGGATAAGGATTATCAAGATGGCTTAAGGAGAATTCACATTTCAAGAGCCCGAGTTCATGCTATTAATAAATTAAATTTCCTGCATGGCTTAGGCTTTGGAGAAAATGCTTTGACTATTGATGTTTTGAATAATTTGCATGGCACTAGTAGTGAGTTACAGGAAAGATTTGATTGCCTTCTGCGCTCAAGGATTGAATTCTCAAAGCTATGTATGATGGTAAGGATGACCCCCAGGATTCTAAACCAGAATTCTGAAATTATAGAGCGGAAAGTGAATTTCTTCAACCAGGAAATGGGAACTACTCTAGACTATGTAGATACTTTTCCAGCAATGTTGCATTATCACCTAGAGGACCGAATTATACCTAGGTACAGATTCCATATGTGGCTTACTGAAAAGGGTCTGTCTTGTAAAAAATATTCCATTCGAAGTATGATTACAAACAGCGAAAGGAAATTTGTAGCTCGGGTGTTTAAAATTCATCCAGCTGCTCCAAAACATTGGTTTGAGCAATTCTGTCACAGTAAATTGTCAATGCAATGA 1677 0.4001 MCSNTFFSFFLHRHFSITTKFPNLSKIPIRHRDFVVREAQKALTDYLHGTRCLPFTYAEHMGNNTLRSLINLIEKVEFSASTFSKSFQRVLRYHPVNEFEVFFESIGIDYNLVSGLLPDDKVFFSQDGTLLDAARALSDFGFPWEKLGVLYMERSSIFGRNAAELKSRLSEFKGFGFGNVEIIGICLAFPFVLSEEGQVGVVIDRLFNDLRLIFLDFALARSIEGNVDSWHEVCRKLRVFFDLNGWNGKLGELMGRNKSIFLEHKEEELVNKVEYFCRFGVKKEEVAQLILQCPELINFDLENPVINVLKLLKHFGLSSEDLKDVSENFAHVLGTNKMVNLPNVMRAIGLQEWFFNKIKGGHHQLLADYITSYPNEDQDKDYQDGLRRIHISRARVHAINKLNFLHGLGFGENALTIDVLNNLHGTSSELQERFDCLLRSRIEFSKLCMMVRMTPRILNQNSEIIERKVNFFNQEMGTTLDYVDTFPAMLHYHLEDRIIPRYRFHMWLTEKGLSCKKYSIRSMITNSERKFVARVFKIHPAAPKHWFEQFCHSKLSMQ. 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00815 558 Gene3D Transcription termination factor 3, mitochondrial 63 213 IPR038538 -
Seca2g00815 558 Gene3D Transcription termination factor 3, mitochondrial 357 552 IPR038538 -
Seca2g00815 558 Gene3D Transcription termination factor 3, mitochondrial 226 356 IPR038538 -
Seca2g00815 558 SMART mt_12 251 282 IPR003690 GO:0003690|GO:0006355
Seca2g00815 558 SMART mt_12 448 479 IPR003690 GO:0003690|GO:0006355
Seca2g00815 558 SMART mt_12 148 178 IPR003690 GO:0003690|GO:0006355
Seca2g00815 558 SMART mt_12 287 318 IPR003690 GO:0003690|GO:0006355
Seca2g00815 558 SMART mt_12 480 514 IPR003690 GO:0003690|GO:0006355
Seca2g00815 558 PANTHER CGI-12 PROTEIN-RELATED 164 538 IPR003690 GO:0003690|GO:0006355
Seca2g00815 558 Pfam mTERF 247 341 IPR003690 GO:0003690|GO:0006355
Seca2g00815 558 Pfam mTERF 429 531 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00815 Seca-Chr2 12407160 12410890 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca2g00815 mTERF 1.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00815 - - lja:Lj1g3v2862750.1 751.125