Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00812 ATGACCCCACCAGCCAAAATGGAAGAAGATAACATCAATAACAGTAACAACAACAAAAGCAACAACTGTGATTATGAATTCTCTGTTTCTGATTCGAAAAGTGGAGACTTTCAAGGTTTTCCAGCCAAAAGAAGCATTGCTGAGAGAAGGGGTTTTAATTCCAATGCAGCAAGGATCAACACAGCGCTTTTTCGCACTGCACCTTCAATTTCAACAACCCCTTTGGCTTCTCCTGCAGCTAGATCAACTAGTCTCACCATTCCCCCTGGCATTAGCCCCACTGCATTGCTTGACTCTCCTATCATGCTTCCCAATTCTCAGGCCTTGCCATCTCCCACCACTGGGACTTTCCTCATGCTGCCACCTCTCACTCAAGAAGGATCAATGCTCACTTCTGAACAAGGGAATGTGGATGTGGCCCCTGCTTCTGATGCTGCTGACTCCTTCAAATTCAAGCCTCATCCCAATTTGGATCCTAATTGTTCACCTGCCTACCCTGCTTCTCTCAATCAGGTTTCTAGTAACTGCAACATGGTAAAGGGAGGAGATAGAGACAACCGACTAGTTGCTCAAGTTCAACCACCATTAGATTTTTCATTCCCAGCAGATTTTCCAAATGACTATTCTGCAAAAGATAGTGAAGTCCATTCTTACAATGATGTGACAATGGTAAGTGATGCTATTGTTAATGCTAATACTGTTGAGATGCCAATGTCTCGTTCTGAGGAAGCTAGTGATGAAAGCACTCTGCCTGAAAATGCTATTGGACAACAACTTGCTTTAAAAGGAGAACAGAAAGAGACATCCCATGCAATAGGAGTGGTAAGGACCTCAGAGGATGGTTATAATTGGAGGAAATATGGACAAAAACAAGTAAAAGGTAGTGAATATCCCAGGAGCTACTATAAATGCACTCAGCCTAATTGTCATGTCAAGAAAAAGGTGGAAAGATCCCATGATGGCCAAATAACTGAAATTATTTACAAAGGTACTCATAACCATGCAAAACCAAATCCTAGTCGTCGAGCATCAGCACTTTCTACTGATGAGATGTCAGAAATTGTTGAAGCTGGTGAAACCAGTGGTAAAGTTGATGCTGATTCGGTCTGGGGAAATATTCAGTCAGGGATGAAAAATGCAAGACACAGTATGGAATGGAAGACTGATGGTCAGGAAAGGACATCCTCAACTTCTGTTGTGACTGAGCTTTCAGATCCTATATCAACTAAGAAAGCTAAACCTCCATGTATGAATGAATTGGAGGATACTCCAGAGCTTTCTTCTACAAATGCTAGTCATTGTGGTGATGAAGATGGAGCCACTCAAGCAATTGTATCACTTGAAGATGATGCTGAAGATGATGAATCAGAGTCAAAAAGAAGGAAAAAGGAGAGCTACACAGTTGAATCAAATTTGTCTTCTAGGGCTGTTCGTGAGCCAAGAGTGGTAGTCCAAATTGAGAGTGAAATAGACATACTTGATGATGGTTATCGCTGGCGGAAGTATGGACAGAAGGTTGTCAAAGGAAATCCAAATCCCAGGAGCTACTACAAATGCACAAGTGCTGGATGTACGGTAAGGAAACATGTGGAAAGGGCTTCCCACAATCTAAAATATGTTGTTACTACTTATGAGGGAAAACATAATCATGAAGTGCCTACTGCTAGAACCAACAACCAGATAAGCTCAAGTGATGGTGGCTTACCTCCCACTGGTGCTAATGGGCTTACATTAGCCGGAAGTGCCAGTATCCCAAAGCCTGAAACTCGTCAAACTCTTGCTCCTCATTTTGATAGAAAACCAGAATTTAGCAATGAATTTCTCAGGCATGGTTTGATTGGAAGTTTCAGTAATGATATGATGTTTGGACCTTCCTCCATGTGCCAAATGAAGCATCCTTCTTTGAATAATACCATGCCTTATGGCTCCTATACCGCCCCTCAAGCTGGATCCATTGCCTCAATGTTCCCTGGTCTTCCAATTCCACTGCCATTGAATCTTCCCTCATCTGGAAATTTTTCTCTAACTGGAATTAACTTTAACTGTGTAAAACCAATGGGTCCTGTGCAGTCTTTCCTTTCAGGGCAGCAGATAAAGGACATTGATACAGGGTTCCTGAGGCCTAAACAGGAGCAGAAGGATGATACTATATATGGAACATGTATACCCCCTCTTGATCATGCAAATGCTTCACTCAATCCGTCAACATTACCATCCATTTATCAAAGTGTCATGCAAAATTTCCCTTCATAA 2253 0.4208 MTPPAKMEEDNINNSNNNKSNNCDYEFSVSDSKSGDFQGFPAKRSIAERRGFNSNAARINTALFRTAPSISTTPLASPAARSTSLTIPPGISPTALLDSPIMLPNSQALPSPTTGTFLMLPPLTQEGSMLTSEQGNVDVAPASDAADSFKFKPHPNLDPNCSPAYPASLNQVSSNCNMVKGGDRDNRLVAQVQPPLDFSFPADFPNDYSAKDSEVHSYNDVTMVSDAIVNANTVEMPMSRSEEASDESTLPENAIGQQLALKGEQKETSHAIGVVRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCHVKKKVERSHDGQITEIIYKGTHNHAKPNPSRRASALSTDEMSEIVEAGETSGKVDADSVWGNIQSGMKNARHSMEWKTDGQERTSSTSVVTELSDPISTKKAKPPCMNELEDTPELSSTNASHCGDEDGATQAIVSLEDDAEDDESESKRRKKESYTVESNLSSRAVREPRVVVQIESEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHNLKYVVTTYEGKHNHEVPTARTNNQISSSDGGLPPTGANGLTLAGSASIPKPETRQTLAPHFDRKPEFSNEFLRHGLIGSFSNDMMFGPSSMCQMKHPSLNNTMPYGSYTAPQAGSIASMFPGLPIPLPLNLPSSGNFSLTGINFNCVKPMGPVQSFLSGQQIKDIDTGFLRPKQEQKDDTIYGTCIPPLDHANASLNPSTLPSIYQSVMQNFPS. 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00812 750 SUPERFAMILY WRKY DNA-binding domain 486 553 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g00812 750 ProSiteProfiles WRKY domain profile. 488 553 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g00812 750 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 201 579 IPR044810 GO:0003700
Seca2g00812 750 Gene3D WRKY domain 480 546 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g00812 750 MobiDBLite consensus disorder prediction 390 405 - -
Seca2g00812 750 Gene3D WRKY domain 267 338 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g00812 750 Pfam WRKY DNA -binding domain 279 334 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g00812 750 Pfam WRKY DNA -binding domain 494 551 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g00812 750 MobiDBLite consensus disorder prediction 383 470 - -
Seca2g00812 750 FunFam WRKY transcription factor 265 338 - -
Seca2g00812 750 SUPERFAMILY WRKY DNA-binding domain 276 337 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g00812 750 SMART WRKY_cls 493 552 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g00812 750 SMART WRKY_cls 278 336 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g00812 750 FunFam WRKY transcription factor 57 479 553 - -
Seca2g00812 750 ProSiteProfiles WRKY domain profile. 273 337 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g00812 750 MobiDBLite consensus disorder prediction 1 25 - -
Seca2g00812 750 MobiDBLite consensus disorder prediction 422 436 - -
Seca2g00812 750 MobiDBLite consensus disorder prediction 7 25 - -
Seca2g00812 750 MobiDBLite consensus disorder prediction 454 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00812 Seca-Chr2 12380228 12384614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00812 73 557 WRKY Transcription Factor Family AT4G26640 38.889 3.68e-93 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca2g00812 WRKY 9.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00812 K18835 - gmx:100800211 1050.81