Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00803 ATGGTTGATGGTGAGGATGAAGATGATGATTTTTTTAACCAAAGCCATATGAGCTCTTTCAATGAAGAGGAGTTTCTGAGAGATATTATTATTGAGCAATCAGTTTTCTCTCCTGAAAATGACGACATGCCCTCTCCCAATAATCCTTCTTCTTATTCCCCAATGCAAAACAAATTTGTAGGATCTGCAATTGCTGACCCTTGTGGTTGTGGTGTTGCAACAGCCATAAGCACCACCAATAGTGGTTTGTCCTTTGATGAGACTAATTTGGAGGGGCATGGCATTCTTCTCAAGAGTAGCAGCTGCTACAACAACTTAGAGAAACCTTCCCCATTATCTCCAACATGCTACATTTTGTCCTTTGATAACTCTGGTGTTGATTACCCTCAACATAACCCTGCTTTGGTGTCCTCTGAAAACAGGGCACAAGATCATTGCATTGAATTACCAAACTCGCACCAACGAACAAAGAAAGCTAGAAACTCTTCTGAGAGTGAAGTTCACATAATGGCCGAGAGAAAAAGGAGACAGGAATTGACTAAGAGCATTGTAGCACTTTCATCCACAATACCTAGCTTGAAGAAGAAAGACAAGGCCCATGTAGTTCGTGAAGCTGTGAATTATGTAAAAGAACTTGAAGGACGTGTGAGAGTGTTAGAGAATCAAAACAGAAAGAAATATGCAGAGTCAGTAATATTGATGAAGAAAACACAACTATGCATAAAAGAAGGCACTGATATTCTCTCCTCTTGTGATGGTTGCTCTGGACACATTGAAGAACTCCCTGAGGTTGAAGCAACTGTTTTACAGAAGGAAGTGCTCATTGGAATCCACTGTGAGAAACAAAAGCAGAGTTTCCTCAAAATATTGACACTGCTTAATAATATCCATCTTTCTGTAACCAGTACCAGCGTATTGCCATTTGGAACTTCCACTGTTAAAATTACCATTATTGCTCAGATGGGCGAGGAATACAACATGACAAATGATGATCTAGTAAAAACACTACGACAACATCTATTGAATTTGAAGTCAGAGGATATACAAAAAACGATCCGTGATGATAGCTAG 1071 0.395 MVDGEDEDDDFFNQSHMSSFNEEEFLRDIIIEQSVFSPENDDMPSPNNPSSYSPMQNKFVGSAIADPCGCGVATAISTTNSGLSFDETNLEGHGILLKSSSCYNNLEKPSPLSPTCYILSFDNSGVDYPQHNPALVSSENRAQDHCIELPNSHQRTKKARNSSESEVHIMAERKRRQELTKSIVALSSTIPSLKKKDKAHVVREAVNYVKELEGRVRVLENQNRKKYAESVILMKKTQLCIKEGTDILSSCDGCSGHIEELPEVEATVLQKEVLIGIHCEKQKQSFLKILTLLNNIHLSVTSTSVLPFGTSTVKITIIAQMGEEYNMTNDDLVKTLRQHLLNLKSEDIQKTIRDDS. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00803 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Seca2g00803 356 SMART finulus 169 218 IPR011598 GO:0046983
Seca2g00803 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 232 IPR036638 GO:0046983
Seca2g00803 356 Gene3D - 152 227 IPR036638 GO:0046983
Seca2g00803 356 Coils Coil 202 229 - -
Seca2g00803 356 PANTHER BHLH TRANSCRIPTION FACTOR 39 341 - -
Seca2g00803 356 Pfam Helix-loop-helix DNA-binding domain 167 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00803 Seca-Chr2 12242286 12245471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00803 118 343 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.583 4.44e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca2g00803 HLH 4.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00803 - - aprc:113863851 254.988