Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00789 ATGCAACCTCTCTTCTTGTTCTTGTTCTTTTTGTTCTTCTCATGTGCACCTCAGCAATTAGCCTCTTTCAAACCCTTTCTCTTTCACAGCATCACCAACAACAGAAGGATTCTCCATGAACCCTTTGTACCATTGGACACTTTCCCTCCATCTGAACCACCAAAACCTTCTTCACCCTTTCCTTCTCCTCATTCAACCCCAAACCCCAAACACCCACTTTCCTCCACAACCACCACTCAAACCACCACCCCAATCACCACCACCACAACAGACCCATCACCATTTTTCCCAAACTACCCTTCTTCCCCTCCTCCTCCTTCTCCAATCACCTTTGCTTCCTTCCCTGCCAACATCTCCTCTCTCATTCTCCCTCACTCTCCTCAACCCACTTCCTCTCCCAACAAACTCCTCCCCGTCGCCCTCTCCGCTGCCGCCTGCGCCGCCGTCGCTGTCGCCATTTCCACTTTCATTTACTGCCGCCGGCGAAACCGGAACCGCCATTCCGCCGACGAAAACAAGGCTCTCCATTCCGACAGCAACCTCGAACTGTTCCCGCGCAATGCCGAACCCTCCGCCGCCAGCCCCGAGTTCCTCTACCTCGGCACCGTCGTGAACTCGCGCGGAATCGACGACGCTCCTCGCGGCGGCGGTTCCATGCCTCGGAAAATGGAATCGCCGGAGCTCCGACCTCTTCCGCCGCTAGCTCGTCTTCCTGAGCCTCCTCCTCCGCCGTCTCCGCCGCGTACTGATGCCGGCGATTCGGAGGAGGAAGACGAGGAGTTTTACTCGCCGAGAGGGTCGTCCTTAGGAGGCCGTGAGAGCTCCGGCGGAACGGAATCCATTTCCCGGCGAGTTTTCTCCGCCCGGAATTTCGCCGGAAGAAGCGAAGTATCAAGTTCCGCTTCGTGCTCTTCCTCTTCTTCCGGTTCACCGGACCGGTCGCATTCCATCAACCTCTCGCCGGCGGCGAGTTTGAGTCCCCGGAGAACACAACCTATGTCACCAGAAATCACCTCACCCCAGAATGCAACTCTAGTCTCATCACCAATTCGGAACCAACACGTGCAATCTTCTTGTTCTTCTTCTTCGTTCTCTTCACCATGTTCAACACCAGAGAGAGCTTTTGGTGAAGAAGTTGACACTCACTCTCCTTCACTGTCTCCACTTTCCTTATCACCCAACAGAGCTTTGGAGAAAAACCCAAATGGGGCATTGAATGCATGCACAAACCCATGTGCATCATCATCATCATTGTCATCACAAGAGAGAATTTTGGAGAAAAATGAAGATGAAGAATCATCACCACTACCACCACCACCACCACAACCACCAAGGGTATCTAATGCTTCAAGTGAAAGTGGAAAGTCTATATCTTCATCTTCAGCTTTTTCTCTACCCTCTTCACCGGAGAAGGTGATGCATCATCAAGGTTTTGATCAGTCTCCAAGAATGTCTAGTGTCTCTGATGGGTTAATGTTACCGGGTCTGTCATCACTGCCTCTGTCACCAGCACTACTTTCATCACCGGAAACAGAAAGAGGATTTAGTATTGGTAGTGATGTGTCTTTGCCACAAAGGAAACACTGGAACATTCCTCTGTTGTCAACAACAACACCCTTTGGTCAATCAGCAACTGTTGTCAATGTTTTTGATCAAATTGAAGCATTTCCAGTTCCTTCACAGAGGAAACACTGGGAGATTCCAGTTATTGCTCCATCACGGCCACCTCCTCCGCCGCCACCACCGCCTCCGGTGCAGCGGCAGAGGAAGCAGTGGGAAATGCAATTGCCAGATCTCTCAACACCTGTTGGTCAACCTATTTTGAGGCCACCAGAATTAGTACCTCCTTCAAGGCCTTTTGTGTTGCAAAAGCTAACAACTGATGTTTCCCCTGTTGAGTTGCCAGCGAGTTTGGGGGAAATTGAAGAGCCCTTGAAACCAAAGTTGAAGCCTTTGCATTGGGACAAAGTGAGAACAAGCTCTGATCGTGAAATGGTGTGGGATCAGTTGAAGTCAAGCTCGTTTAAATTGAATGAGGAAATGATTGAAACATTGTTTGTAGTGAACACACCCAACCTAAAACCTAAGGATGCTACTCCAAGCACTGTTCATCTGCCTCAAAATCAGGAGGACAGAGTACTTGATCCTAAAAAGTCTCAAAATATTGCAATCTTGCTCAAAGCTCTTAATGTAACCATTGAGGAAGTGTGTGAAGCACTTTTAGAAGGTAGTACTGATACACTTGGAGCAGAACTACTTGAAAGCTTGTTAAAAATGGCACCAAGCAAGGAAGAAGAACGTAAATTGAAGGAACATAAAGATGACTCACCAACTAAGCTTGATCTGGCTGAGAAATTTTTGAAGGCAGTGCTTGACATACCTTTCGCATTTAAAAGGGTTGAAGCAATGCTTTACATGGTCAATTTTGAATCTGAAGTGGAGTATCTTACAAAATCCTTTCAAACTCTAGAGGCCGCCTGTGAAGAGCTGCGACATTGTAGAATGTTCTTGAAGCTTCTTGAGGCTGTACTTAAAACTGGAAACCGCATGAATGTGGGGACAAACCGTGGTGATGCACAGGCCTTCAAACTTGATACACTTCTCAAGCTGGCTGATGTCAAAGGTGCAGATGGGAAAACCACTCTACTGCATTTTGTTGTACAGGAAATTATTAGAACTGAAGGTGCTCGTCTCTCGGGTACTACTCAAACTCCAAGCTCTTCTTTGATTGAAGATGCCAAGTGTAGGAGGCTTGGCCTACAAGTTGTATCTAATCTGAGTTCAGAGCTAGCAAATGTGAAGAAAGCTGCTGGTATGGATTCTGAAGTTCTCAGCAGTGAAGTCTCTAAACTTACCAAAGGAATCGCAAACATCGCAGAGGTTGTGCAATTAAACCAAAAGGCTGGATCTGATGAAAGCAGTCAGAAATTCACAGAATCAATGAACAAATTCATTAGAATGGCTGAGGAGGAAATTCTAAAAATCAAAGCCCAAGAAAGTGTTGCAATGTCCCTTGTGAAGGAGATTACAGAGTATTTTCATGGGAACTTGGCAAAGGAAGAAGCTCATCCATTTAGAATCTTCATGGTAGTCAGAGACTTTTTAGCAGTTCTTGACAGAGTCTGCAAAGAAGTTGGTATGATAAATGAGAGAACCATGATTAGTTCAGCTCATAAATTTCCTGTTCCAGTTAATCCAATGCTTCCTCAACCCCTTCCTGGATTACATGGAAGGCAACAGTTGAATGACTCTTCAGATGATGATAGTCCATCACCTTAG 3279 0.4697 MQPLFLFLFFLFFSCAPQQLASFKPFLFHSITNNRRILHEPFVPLDTFPPSEPPKPSSPFPSPHSTPNPKHPLSSTTTTQTTTPITTTTTDPSPFFPNYPSSPPPPSPITFASFPANISSLILPHSPQPTSSPNKLLPVALSAAACAAVAVAISTFIYCRRRNRNRHSADENKALHSDSNLELFPRNAEPSAASPEFLYLGTVVNSRGIDDAPRGGGSMPRKMESPELRPLPPLARLPEPPPPPSPPRTDAGDSEEEDEEFYSPRGSSLGGRESSGGTESISRRVFSARNFAGRSEVSSSASCSSSSSGSPDRSHSINLSPAASLSPRRTQPMSPEITSPQNATLVSSPIRNQHVQSSCSSSSFSSPCSTPERAFGEEVDTHSPSLSPLSLSPNRALEKNPNGALNACTNPCASSSSLSSQERILEKNEDEESSPLPPPPPQPPRVSNASSESGKSISSSSAFSLPSSPEKVMHHQGFDQSPRMSSVSDGLMLPGLSSLPLSPALLSSPETERGFSIGSDVSLPQRKHWNIPLLSTTTPFGQSATVVNVFDQIEAFPVPSQRKHWEIPVIAPSRPPPPPPPPPPVQRQRKQWEMQLPDLSTPVGQPILRPPELVPPSRPFVLQKLTTDVSPVELPASLGEIEEPLKPKLKPLHWDKVRTSSDREMVWDQLKSSSFKLNEEMIETLFVVNTPNLKPKDATPSTVHLPQNQEDRVLDPKKSQNIAILLKALNVTIEEVCEALLEGSTDTLGAELLESLLKMAPSKEEERKLKEHKDDSPTKLDLAEKFLKAVLDIPFAFKRVEAMLYMVNFESEVEYLTKSFQTLEAACEELRHCRMFLKLLEAVLKTGNRMNVGTNRGDAQAFKLDTLLKLADVKGADGKTTLLHFVVQEIIRTEGARLSGTTQTPSSSLIEDAKCRRLGLQVVSNLSSELANVKKAAGMDSEVLSSEVSKLTKGIANIAEVVQLNQKAGSDESSQKFTESMNKFIRMAEEEILKIKAQESVAMSLVKEITEYFHGNLAKEEAHPFRIFMVVRDFLAVLDRVCKEVGMINERTMISSAHKFPVPVNPMLPQPLPGLHGRQQLNDSSDDDSPSP. 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00789 1092 PANTHER FORMIN-RELATED 7 1086 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Seca2g00789 1092 MobiDBLite consensus disorder prediction 69 95 - -
Seca2g00789 1092 MobiDBLite consensus disorder prediction 46 68 - -
Seca2g00789 1092 SUPERFAMILY Formin homology 2 domain (FH2 domain) 575 1050 - -
Seca2g00789 1092 MobiDBLite consensus disorder prediction 1068 1092 - -
Seca2g00789 1092 MobiDBLite consensus disorder prediction 1077 1092 - -
Seca2g00789 1092 MobiDBLite consensus disorder prediction 208 489 - -
Seca2g00789 1092 MobiDBLite consensus disorder prediction 44 101 - -
Seca2g00789 1092 SMART it6_source 639 1053 IPR015425 -
Seca2g00789 1092 MobiDBLite consensus disorder prediction 231 249 - -
Seca2g00789 1092 MobiDBLite consensus disorder prediction 570 589 - -
Seca2g00789 1092 MobiDBLite consensus disorder prediction 447 467 - -
Seca2g00789 1092 Gene3D Formin, FH2 domain 642 1047 IPR042201 -
Seca2g00789 1092 ProSiteProfiles Formin homology-2 (FH2) domain profile. 639 1064 IPR015425 -
Seca2g00789 1092 MobiDBLite consensus disorder prediction 292 370 - -
Seca2g00789 1092 MobiDBLite consensus disorder prediction 570 587 - -
Seca2g00789 1092 MobiDBLite consensus disorder prediction 268 285 - -
Seca2g00789 1092 MobiDBLite consensus disorder prediction 383 422 - -
Seca2g00789 1092 Pfam Formin Homology 2 Domain 644 1038 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00789 Seca-Chr2 11990988 11995811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00789 601 1080 FH2 protein (formin) Gene Family AT3G25500 73.566 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00789 - - gmx:100801837 1101.27