Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00785 ATGGCCGGCTTAGACTTGGGTTCAGCATCACACTTTGTTCATCGCCTTCAACGCCCTGACCTTGAAGATCATGATGATGATGAGAATCAAGACCTTGATGGTACCAACAATAGCAATGAAGGGTTTGACCTAGTTTCACCAAATCAAGGTTCTGGAGGTGATGTTGTTGCTAGAAGGCCAAGGGGTAGACCACCAGGTTCAAAGAACAAACCAAAACCACCAATTATCATCACAAGAGAGAGTGCAAATACCCTTAGGGCTCACATCCTTGAAGTTAGTAGTGGTTGTGATGTCTTTGACTCTGTGGCTACCTATGCAAGGAAGCGTCAAAGAGGGATCTGTGTCCTAAGTGGTAGTGGAACCGTCACTAATGTCACGCTCCGGCAGCCAGCTGCTGCCGGAGCGGTAGTGACGCTTCATGGAAGATTCGAGATACTTTCATTATCAGGGTCATTCCTACCACCTCCTGCTCCACCAGGGGCTACTAGTTTGAGTGTGTTCCTTGGTGGAGGTCAGGGCCAAGTTGTTGGTGGGAATGTTGTTGGTCCTTTGGTGGCTTCTGGGCCTGTTATTGTTATTGCTTCATCATTTACTAATGTGGCATATGAGAGGTTGCCTTTGGATGAGGATGAATCTTTGCAGATGCAACAAGGGCAATCATCTGCTGGCGGTGGCGGTAGCAGTGGTGGAGTTAATAATAACTCTTTTCCTGACCCATCTTCAGGGCTACCATTCTTTAATTTGCCTCTAAACATGCCTCAGTTACCTGTTGATGGTTGGGCTGGAAACTCTGGTGGAAGGCAATCTTATTGA 813 0.4723 MAGLDLGSASHFVHRLQRPDLEDHDDDENQDLDGTNNSNEGFDLVSPNQGSGGDVVARRPRGRPPGSKNKPKPPIIITRESANTLRAHILEVSSGCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLSVFLGGGQGQVVGGNVVGPLVASGPVIVIASSFTNVAYERLPLDEDESLQMQQGQSSAGGGGSSGGVNNNSFPDPSSGLPFFNLPLNMPQLPVDGWAGNSGGRQSY. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00785 270 Gene3D - 85 220 - -
Seca2g00785 270 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 226 IPR014476 GO:0003680
Seca2g00785 270 MobiDBLite consensus disorder prediction 211 242 - -
Seca2g00785 270 MobiDBLite consensus disorder prediction 15 75 - -
Seca2g00785 270 Pfam Plants and Prokaryotes Conserved (PCC) domain 86 199 IPR005175 -
Seca2g00785 270 CDD DUF296 86 168 IPR005175 -
Seca2g00785 270 ProSiteProfiles PPC domain profile profile. 82 219 IPR005175 -
Seca2g00785 270 MobiDBLite consensus disorder prediction 212 241 - -
Seca2g00785 270 PIRSF ESCAROLA 4 263 IPR014476 GO:0003680
Seca2g00785 270 SUPERFAMILY AF0104/ALDC/Ptd012-like 82 213 - -
Seca2g00785 270 FunFam AT-hook motif nuclear-localized protein 85 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00785 Seca-Chr2 11904928 11906521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00785 1 267 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 62.500 4.51e-98 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00785 - - gmx:100803960 398.282