Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00782 ATGCAGAATACAGAACTGTGTCTGGGGTTGCTGGACCATTGGGGACCTAAATATCAAGAGATTGTTAACATTCGCTTAGGGGATGGAACTACTAGGCGTGGACAAGTTCTAGAAGTTGATGGTGAAAAAGCTGTTGTTCAGGTTTTTGAAGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACTGGAGAGGTGTTAAAAACTCCTGTATCGCTGGACATGCTTGGCCGCATATTTAATGGTTCAGGAAAACCAATTGATAATGGTCCACCCATATTACCTGAGGCTTACTTGGACATATCGGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCAGAGGAGATGATACAGACAGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAAATATGTCGTCAGGCTGGCTTAGTCAAGCGATTAGAGAAATCTGATAATCTTCTTGAGGATGGAGGAGAGGACAATTTTGCCATTGTTTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTTAAACGTGACTTTGAGGAGAATGGCTCGATGGAGAGAGTGACCCTTTTCCTTAATCTGGCAAATGATCCTACAATTGAGCGTATCATCACCCCTCGTATTGCTCTTACGACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTCACGGATATGAGTTCCTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTGCCAGGTAGACGTGGGTATCCCGGATACATGTATACAGATCTTGCAACAATATATGAACGTGCTGGAAGGATTGAGGGGAGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCAAATGATGATATTACACATCCAACTCCTGATCTTACTGGATATATTACTGAGGGACAGATATATATTGACAGGCAGCTGCATAACAGGCAGATATACCCACCAATCAATGTCCTTCCATCACTGTCTCGATTGATGAAGAGTGCCATTGGTGAAGGAATGACACGAAGGGATCATGCTGATGTGTCCAACCAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGCTATATCTGGAATTTTTGGACAAATTTGAGAGGAAGTTTGTTACTCAAGGAGCTTATGATACCCGCAACATCTTCCAGTCTCTGGATCTTGCATGGACTTTGCTTCGGATTTTCCCTCGCGAGCTTCTTCATCGTATACCAGCCAAAACTCTTGATCAGTACTACAGCCGAGATGCCGGTAACTGA 1395 0.4294 MQNTELCLGLLDHWGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEDGGEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDAGN. 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00782 464 NCBIfam V-type ATPase subunit B 15 462 IPR005723 GO:0033180|GO:0046961|GO:1902600
Seca2g00782 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 359 IPR027417 -
Seca2g00782 464 FunFam V-type proton ATPase subunit B, brain 7 464 - -
Seca2g00782 464 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 12 461 IPR022879 -
Seca2g00782 464 Gene3D - 10 463 - -
Seca2g00782 464 CDD V_A-ATPase_B 68 361 - -
Seca2g00782 464 PIRSF V-ATPsynth_beta/V-ATPase_B 8 464 IPR022879 -
Seca2g00782 464 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 123 353 IPR000194 GO:0005524
Seca2g00782 464 CDD ATP-synt_V_A-type_beta_C 363 457 - -
Seca2g00782 464 CDD ATP-synt_V_A-type_beta_N 15 67 - -
Seca2g00782 464 ProSitePatterns ATP synthase alpha and beta subunits signature. 344 353 IPR020003 GO:0005524
Seca2g00782 464 Pfam ATP synthase alpha/beta family, beta-barrel domain 16 66 IPR004100 GO:0046034|GO:1902600
Seca2g00782 464 Hamap V-type ATP synthase beta chain [atpB]. 2 462 IPR022879 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00782 Seca-Chr2 11847998 11853361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00782 15 464 Primary Pumps ATPases(2) AT4G38510 97.778 0.0 906