Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00761 ATGGCTTCTCCTTCTTCCCCCACAGATTCCAACCCTCCCTCCGCCGTTCCTCTCCCTCTTCCTGCTCCGCCTCACTCCACCTCTCGCCGCCTTCCTCCGCCGTGCTGGACTCCTGAAGAAACCGCAGCCCTCATCGACGCCTACCGTGACAAATGGTACTCCCTTGGCCGTACCAATCTCAAAGCTACCCACTGGCAAGAAGTCGCCGACGCCGTCACTGAACGGTGCCCCAACGCCTCCCCCACCGCCAAAACCGCCGTCCAGTGCCGCCACAAAATGGAAAAGCTCAGAAAACGCTACCGTTCCGAGATCCAGCGGCTCCGTTCCCTCCCTGTTCCACGCTCTCGCTCTTCCTCCTCTTGGGTCCACTTCAAATCCATGGATTCCATGGAAAAAGGTCCATCACCTCCTCCAAAACCCGACAACAACCTCAACCACCGTGAAACCCTCGATGATCCCGATGATCTCGATGATGACGACGATCTCTACGAGGAATTCAAGAACGGTTCCAACACGAGGAGCCTCGACAAGTTGTACAGGAACGGAATGGGTGGTGGCGGTGGTAGTGGGGTCGGGTTTCGGATCCGGATCCCTACTGGGGTAAGCGTTGCACAACCTGGGTCGAAGCTTTTTGGGAATCAGAAACTGGGTAACAACCCCACCGATTCGGGTTCACGTGGGTACACCAATGGTGGTAGTGGCGGTTCAACCAGGGTTGTGAAGGATCGGGCCGGGTTAGGGAAGAGGGAGAGAGACCCTGTTGGTGAAATGGTGAGTGCGATCAAGGTTTTGCGAGATGGGTTTGTGAGGATGGAGCAGATGAAGATGGAGATGGCGAGAGAGATCGAAACCATGCGAATGGAGATGGAAATGAAGCGCACAGAGATGATTCTGGAATCGCAGCAGAGGATCGTTGAGGCATTTGCAAAAGCAGTTTCTGAGAAGAAGAAGAAGAAGAAGGGTAACGCGATACCTTCACCGTCAGAATCATAG 993 0.5498 MASPSSPTDSNPPSAVPLPLPAPPHSTSRRLPPPCWTPEETAALIDAYRDKWYSLGRTNLKATHWQEVADAVTERCPNASPTAKTAVQCRHKMEKLRKRYRSEIQRLRSLPVPRSRSSSSWVHFKSMDSMEKGPSPPPKPDNNLNHRETLDDPDDLDDDDDLYEEFKNGSNTRSLDKLYRNGMGGGGGSGVGFRIRIPTGVSVAQPGSKLFGNQKLGNNPTDSGSRGYTNGGSGGSTRVVKDRAGLGKRERDPVGEMVSAIKVLRDGFVRMEQMKMEMAREIETMRMEMEMKRTEMILESQQRIVEAFAKAVSEKKKKKKGNAIPSPSES. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00761 330 SMART 118neu2 43 135 IPR006578 -
Seca2g00761 330 FunFam Trihelix transcription factor ASIL2 36 102 - -
Seca2g00761 330 Pfam Myb/SANT-like DNA-binding domain 34 130 IPR044822 -
Seca2g00761 330 MobiDBLite consensus disorder prediction 10 31 - -
Seca2g00761 330 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 12 315 IPR044823 -
Seca2g00761 330 MobiDBLite consensus disorder prediction 107 180 - -
Seca2g00761 330 MobiDBLite consensus disorder prediction 206 236 - -
Seca2g00761 330 MobiDBLite consensus disorder prediction 111 125 - -
Seca2g00761 330 Gene3D - 36 102 - -
Seca2g00761 330 Coils Coil 90 110 - -
Seca2g00761 330 ProSiteProfiles Myb-like domain profile. 36 97 IPR001005 -
Seca2g00761 330 MobiDBLite consensus disorder prediction 206 251 - -
Seca2g00761 330 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00761 Seca-Chr2 11686857 11687849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00761 35 133 Trihelix Transcription Factor Family AT1G54060 34.343 1.37e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca2g00761 Myb_DNA-bind_4 2.6e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00761 - - mtr:11426900 368.237