Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00730 ATGGAGAGGGTTGCAGAGCCAAAGGTACTTCCTCGGTCCTTGCCTGTCCTGGTTGAGGTATCTAGTCATTCCAATGCACACACAGCTGCAATTAGAGAAGCTGGTCAGAGGCTAATTGGGCAGGATGTTTCAAGTGTGCGTGGGATTTCAGTGAGAGATATGAATCAATTTTCAAAAGCGCGGGATGGCCCTATGACACGCCTGGCCTCCATTAGAGAAGTGGCTCAGTTGTCAAATGCACGAATAGTTTTGGTAAGAGAGAATATGGGATTTGATACACGATCCTCTCAAGAACCGGTCTCCCCTGCACCTACAAGAACATGGAAAGGAAAGGCCTCTTTGCCAGAACCTGAAGACCTTATGTCTGATATTGAGACATTGAAGAGCAGCAAGGATTCTTTTGGGGACACTGGTTCTGGTTCATTTTCTGGTGCTAGTCATCCCCCAGAACCTGTTGATTTTGATCTTATGAGAACGGTTTATGTACCAATAGGTCAAAACAAATCTGAGGCTGGATGCTTAATGAAGAGCATGTCCTTGAAGGGTCCTTTCTTAGAAGATCTTTCAATTCGTGTTCCCACTAAGAAACCAAGCCTTGCTGTTCTTTCTCCAGCAGAAAGTCTGGTTGAAGAATCAAATGACATGGGGAATTTATCCTCACCATTTTCAGGTGCTCGTGCGTCACAGAATACTGATAACTCTTTCGTTCCCCTTGATTCTGAGGAGAAAGAATGTGTTTGGGATGCTTCTTTGCCTCCAAGTGGCAATGTCAGTCCACATAGTAGTATTGATAGTACTAGTGTTGTAAGAACATTGAGCATTGCTAATAGTTGTGCAAGTTCATATCGCAGTGATGCAATCACTAGTGATGGCATGCTTAGTTTAGACAGGAATTTTGATAGTACTAAAGGAAGTGTAAGGGGGGATTCACTTGAGAGTGCAAAAACTAGTGCCAGTCGAGCAAGTGATAGCAGTGGCCTCAGTGATGACAGCAACTGGAGTAACATCACTGGTAGTGCCAATAAGCCCCACAAAGGAAATGATCCTAGGTGGAAGGCTATCCTTGCAATCAGGGCACGGGATGGAATTTTGGGCATGAGTCATTTTAGGTTACTCAAACGACTTGGCTGTGGCGATATTGGAAGTGTATATCTCTCAGAGCTGAGTGCAACTCGGTGTTATTTTGCAATGAAAGTGATGGACAAAGCATCCCTGGCAAGCAGAAAGAAGCTGACCAGAGCACAGACAGAAAGGGAGATATTGCAGTTGCTGGACCATCCATTTCTGCCTACATTGTATACACATTTCGAGACTGATAGATTCTCCTGTTTGGTAATGGAATACTGTCCTGGGGGTGATCTACACACTTTAAGGCAACGACAACCTGGGAAACATTTCTCTGAGTACGCTGCACGCTTTTATGCTGCTGAGGTCCTGTTGGCACTTGAATATCTTCACATGCTTGGAGTTGTGTATAGAGACCTTAAACCTGAAAATGTACTGGTCCGAGATGATGGTCACATAATGCTCTCAGACTTTGATCTCTCTCTTAGATGTGCTGTTTCACCCACCCTTATTAGAACCTACGACGGTGACCCTTCTAAACGGGCTGGTGGTGCATTTTGTGTCCAACCAGCTTGCATTGAGCCTTCATCAGTATGCATCCAGCCTTCCTGTTTCATGCCGCGGCTCTTCCCTCAGAAAAATAAGAAGTCGTCAAGGAAGTCGAAAGCTGAGCCTGGCCTGCCATCAGGCACACTTCCAGAGCTTGTTGCTGAGCCTACAACAGCGCGGTCTATGTCCTTTGTTGGCACACATGAATACCTTGCCCCTGAAATTATCAAAGGAGAGGGTCATGGAAGTGCAGTTGATTGGTGGACATTTGGAATTTTCTTGCATGAGCTGTTATATGGTAAAACCCCTTTCAAAGGATCAGGAAACCGTGCCACACTGTTCAATGTAGTAGGTCAGCAGCTCAGGTTTCCTGAATCACCAGCCACCAGTTATGCCAGCCGTGATCTGATCCGGGGGCTGCTGGTGAAGGAGCCACAACACCGGCTTGGGGTGAAGAGGGGTGCAACTGAGATCAAACAGCACCCTTTCTTTGAAGGTGTGAATTGGGCATTGATTAGGTGCAGCACACCACCAGAAATTCCAAGACCAGTTGAAAGTGAGCTACCAGCTAAGTTTGAAGCAGTTGATACTGTTGGGGTTGGCAGCAATAATAGTAAGAAGATGGTAGGTGGTAATGATATGAAGTCTGGGGGTAAATATCTGGACTTTGAGTTCTTTTAG 2295 0.4571 MERVAEPKVLPRSLPVLVEVSSHSNAHTAAIREAGQRLIGQDVSSVRGISVRDMNQFSKARDGPMTRLASIREVAQLSNARIVLVRENMGFDTRSSQEPVSPAPTRTWKGKASLPEPEDLMSDIETLKSSKDSFGDTGSGSFSGASHPPEPVDFDLMRTVYVPIGQNKSEAGCLMKSMSLKGPFLEDLSIRVPTKKPSLAVLSPAESLVEESNDMGNLSSPFSGARASQNTDNSFVPLDSEEKECVWDASLPPSGNVSPHSSIDSTSVVRTLSIANSCASSYRSDAITSDGMLSLDRNFDSTKGSVRGDSLESAKTSASRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSATRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIRTYDGDPSKRAGGAFCVQPACIEPSSVCIQPSCFMPRLFPQKNKKSSRKSKAEPGLPSGTLPELVAEPTTARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEIPRPVESELPAKFEAVDTVGVGSNNSKKMVGGNDMKSGGKYLDFEFF. 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00730 764 Pfam Protein kinase domain 599 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00730 764 Pfam Protein kinase domain 370 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00730 764 ProSiteProfiles Protein kinase domain profile. 369 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00730 764 MobiDBLite consensus disorder prediction 302 346 - -
Seca2g00730 764 SMART serkin_6 369 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00730 764 Gene3D Transferase(Phosphotransferase) domain 1 453 720 - -
Seca2g00730 764 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Seca2g00730 764 MobiDBLite consensus disorder prediction 112 130 - -
Seca2g00730 764 MobiDBLite consensus disorder prediction 302 342 - -
Seca2g00730 764 Gene3D Phosphorylase Kinase; domain 1 369 723 - -
Seca2g00730 764 MobiDBLite consensus disorder prediction 93 149 - -
Seca2g00730 764 CDD STKc_phototropin_like 367 721 - -
Seca2g00730 764 SUPERFAMILY Protein kinase-like (PK-like) 351 724 IPR011009 -
Seca2g00730 764 PANTHER FLIPPASE KINASE 1-RELATED 119 725 - -
Seca2g00730 764 FunFam serine/threonine-protein kinase D6PK-like 453 520 - -
Seca2g00730 764 FunFam Serine/threonine-protein kinase D6PK-like 367 452 - -
Seca2g00730 764 MobiDBLite consensus disorder prediction 570 589 - -
Seca2g00730 764 MobiDBLite consensus disorder prediction 212 231 - -
Seca2g00730 764 FunFam serine/threonine-protein kinase D6PK-like 597 720 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00730 Seca-Chr2 10934479 10940996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00730 1 764 AGC Kinase Gene Family AT2G44830 67.433 0.0 971
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca2g00730 Pkinase 7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00730 - - gmx:100800019 1326.23