Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00724 ATGGCTGCGGTGGCGCGTGAAGTGCACGCACCACCGACATGGAAACGGTACCGAGGGGTGAGGCGGAGGCCATGGGGGAAGTTCGCGGCGGAGATCAGGGACCCGAAGAAGAACGGAGCTAGGGTTTGGCTTGGGACTTATGAGACTGAAGAAGAAGCAGCTATGGCTTATGACAAAGCTGCTTTCAAGATGCGTGGACAAAAAGCAAAGCTCAATTTTCCTCATCTCATTGGCTCTGATGATGTGCAATCGGAGCCGGTGAGATCAGTGGAGGTTTCCAAACGGAGGTTGCCGGAGATTTCTCCATCTTCATCGGAGGATAGTTGTGAGCAATCACAAGGGTCAAAGAGGAGGAGGAAGAGCATGATTGATCTATTGAATAAGTTAGCAAAGAGTCGAAGTCAAGCTAAGGTTGTTAAATCAAATGCAAAAGCTGCAGCGGCGCGTGTAGTGAACGCGCCTCCGACATGGAAGCGTTACCGCGGCGTGAGGCGTAGGCCGTGGGGGAAATTTGCGGCGGAGATCAGAGACCCTAAGAAGAACGGTGCTAGGGTTTGGCTTGGAACTTATGTGACTGAGGAGGAAGCAGCTATGGCTTATGATAAGGCTGCCTTCAAGATGCGTGGCCAAAAAGCCAAGCTGAATTTTCCTCACCTCATTGGCTCCGATGTGCCGCCGAAGCCGGCAAGAGTGGCGGCTTCGAAGCGGTGCTCGCCGGAGCCTTCTTCGTCGGAGGATAGTTGTGAGCAATCACACTCAACACAAGGGTCAAAGAGGAGAAGGAGCATGGTTGATCTATTGAATAAGTTAGCAAAGAATAGAAGCCAAGCTAATAAGGTTGTTAAAATGGAGTTAGATGAAAATGATGTTAATCAATGGGTGAATGAGTTGAGTGATTGGAGTGTAATATTGTGCTCCTAA 921 0.5005 MAAVAREVHAPPTWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETEEEAAMAYDKAAFKMRGQKAKLNFPHLIGSDDVQSEPVRSVEVSKRRLPEISPSSSEDSCEQSQGSKRRRKSMIDLLNKLAKSRSQAKVVKSNAKAAAARVVNAPPTWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYVTEEEAAMAYDKAAFKMRGQKAKLNFPHLIGSDVPPKPARVAASKRCSPEPSSSEDSCEQSHSTQGSKRRRSMVDLLNKLAKNRSQANKVVKMELDENDVNQWVNELSDWSVILCS. 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00724 306 CDD AP2 15 76 IPR001471 GO:0003700|GO:0006355
Seca2g00724 306 PANTHER DNA-BINDING DOMAIN 121 270 IPR044808 GO:0003700|GO:0009873
Seca2g00724 306 MobiDBLite consensus disorder prediction 237 251 - -
Seca2g00724 306 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Seca2g00724 306 MobiDBLite consensus disorder prediction 84 119 - -
Seca2g00724 306 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Seca2g00724 306 CDD AP2 158 219 IPR001471 GO:0003700|GO:0006355
Seca2g00724 306 FunFam Ethylene-responsive transcription factor 2 158 218 - -
Seca2g00724 306 FunFam Ethylene-responsive transcription factor 2 15 75 - -
Seca2g00724 306 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
Seca2g00724 306 SMART rav1_2 159 223 IPR001471 GO:0003700|GO:0006355
Seca2g00724 306 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Seca2g00724 306 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Seca2g00724 306 MobiDBLite consensus disorder prediction 225 262 - -
Seca2g00724 306 Gene3D AP2/ERF domain 158 218 IPR036955 GO:0003700|GO:0006355
Seca2g00724 306 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
Seca2g00724 306 ProSiteProfiles AP2/ERF domain profile. 159 217 IPR001471 GO:0003700|GO:0006355
Seca2g00724 306 Pfam AP2 domain 159 209 IPR001471 GO:0003700|GO:0006355
Seca2g00724 306 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
Seca2g00724 306 SUPERFAMILY DNA-binding domain 159 218 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00724 Seca-Chr2 10736796 10744660 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00724 159 264 AP2-EREBP Transcription Factor Family AT2G44840 63.551 3.47e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca2g00724 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00724 K09286 - gmx:102663872 218.009