Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00723 ATGGATTCAGATTTTGCATATTTGGATCACATTCAACAATACCTTCTTGACGATGATTCAAGCATTCTAACATCAAATCATCTGCAACCTATTCCAAACCCTAATTCAAATGCAAATGCTTCAGCGGCGCGTGTAGTGAACGCGCCTCCGACATGGAAGCGTTACCGTGGCGTGAGGCGTAGGCCGTGGGGGAAATTCGCGGCGGAGATAAGAGACCCTAAGAAGAACAGCGCTAGGGTTTGGCTTGGAACTTATGTGACCGAAGAAGAAGCGGCTATGGCTTATGACAAAGCAGCTTTCAAGATGCGTGGCCGAAAAGCCAAGCTGAATTTTCCTCACCTCATTGGCTCTGATCAAGTTTCGCCGGAGCCTTGTTCATCGGAGGATAGTTGTGAGCAATCACACTCACAGTCACAGGGGTCAAAGAGGAGGATTGTTGATATACTAAATAAGTTAGCAAAGAATAGAAGGCAAGCCAATTGGTGGTAA 489 0.4642 MDSDFAYLDHIQQYLLDDDSSILTSNHLQPIPNPNSNANASAARVVNAPPTWKRYRGVRRRPWGKFAAEIRDPKKNSARVWLGTYVTEEEAAMAYDKAAFKMRGRKAKLNFPHLIGSDQVSPEPCSSEDSCEQSHSQSQGSKRRIVDILNKLAKNRRQANWW. 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00723 162 CDD AP2 53 114 IPR001471 GO:0003700|GO:0006355
Seca2g00723 162 ProSiteProfiles AP2/ERF domain profile. 54 112 IPR001471 GO:0003700|GO:0006355
Seca2g00723 162 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Seca2g00723 162 Gene3D AP2/ERF domain 53 113 IPR036955 GO:0003700|GO:0006355
Seca2g00723 162 FunFam Ethylene-responsive transcription factor 2 53 113 - -
Seca2g00723 162 PANTHER DNA-BINDING DOMAIN 38 137 IPR044808 GO:0003700|GO:0009873
Seca2g00723 162 MobiDBLite consensus disorder prediction 118 145 - -
Seca2g00723 162 PRINTS Ethylene responsive element binding protein signature 94 114 IPR001471 GO:0003700|GO:0006355
Seca2g00723 162 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Seca2g00723 162 SMART rav1_2 54 118 IPR001471 GO:0003700|GO:0006355
Seca2g00723 162 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Seca2g00723 162 MobiDBLite consensus disorder prediction 120 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00723 Seca-Chr2 10700359 10700847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00723 54 122 AP2-EREBP Transcription Factor Family AT2G44840 79.710 9.68e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca2g00723 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00723 K09286 - gmx:102663872 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10164 4 235716205 235716864 Seca2g00723 2 10700359 10700847 PCT