Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00706 ATGAGTCGTAGAGTGAGGAGGAAGGTGGCAAAGAAAGGCAAAGAGAATGTGGGGTTGTCCAGTTTCCCTGAAATTCAAGGCGAGGTTTCTGATTCAGAACGCCAAGGAATTGTTGATTGGAGGTGCTTACCTGATGATACAGTAATTCAGCTGTTGTCATGCCTGAGTTATAGGGATCGAGCTAGCTTATCATCAACTTGTAGGACATGGAAGCTTCTTGGTAGCTCCCCATGTTTGTGGACTTCTCTGGATCTTCGTTCCCACAGGTTTGATGCCAGCATGGCATCTTCACTTGCTCCCAGATGTATGCATCTTCAGAAGCTTCGGTTTCGTGGGGCGGAGTCTGCTGATGCGATAATTCACCTTCGAGCTAGGAATTTACGAGAAATAAGTGGTGACTATTGTAGGAAGATTACTGATGCAACTCTTGCTGTGGTTGCGGCTCGGCACGAGTTCCTTGAGAGTCTTCAGCTTGGACCAGATTTCTGTGAGAGAATCAGTAGTGATGCTATTAAGGCAATAGCCCATTGCTGTCCTAGATTGAGTAAACTTCGACTCTCAGGCATTAGGGATGTCAATGCCGATGCTATTAATGCCTTGGCTAAGCATTGTCCAAAGTTGACTGATATTGGGTTCATTGATTGTCTGAATGTTGATGAGCTTGCACTGGGAAACGTGTCATCGGTTCGTTTCCTTTCTGTTGCGGGGACATCAAGTATGAAGTGGGGTGTGGTTTCCCATCTTTGGCATAAGCTTCCTAACCTGATTGGATTAGATGTTTCAAGAACTGATATTGGTCCATCTGCTGTTTCAAGATTGTTATCCTTATCACAGAATTTGAGGGTTTTGATTGCTTTGAATTGTCCTATACTCGAAGAAGACACTAGCTTCTCTGCTAGTAAATATAAAAGCAAGTTATTAATTTCCCTTTCTACTGATATTTTTAAAGGACTAGCTTCTTTATTTTTTGGTAATACAAAGAGAGGAAAGAATGTGTTTTTGGACTGGAGGACTTCAACGAATAATGATAAGAACCTTAATGAAATTATACCCTGGCTTGAATGGATGCTATCCCATACACTCCTGCGTTCTGCTGAGAGCCCCCAACAGGGCCTTGATAGTTTCTGGGTTGAACAAGGTGGATCGCTCTTGCTTAGTCTAATGCAGAGTTCTCAAGAGGATGTTCAGGAGAGGGCAGCTACAGGTCTTGCTACATTTGTTGTAATTGATGATGAAAATGCTAGCATCGATTGTGGAAGGGCTGAAGCAGTTATGCGAGACGGTGGCATACGACTCCTTCTTGGCCTGGCAAAATCTTGGAGGGAAGGGCTTCAGTCTGAGGCAGCTAAGGCCATTGCAAATTTGTCTGTCAATGCCAATGTTGCCAAAGCTGTTGCAGAAGAGGGTGGGATTGAGATTCTCGCTGGTTTGGCTAGGTCAACAAACAAGCTAGTGGCTGAAGAGGCCGCTGGAGGATTATGGAATCTCTCTGTTGGAGAAGAGCACAAGGGTGCCATTGCTAAAGCTGGTGGAATACAAGCCCTAGTGGATCTTATATTCAAGTGGTCCTCTAGCGGGGATGGAGTTTTAGAACGAGCAGCTGGTGCATTGGCTAATTTGGCAGCTGATGACAAGTGTAGTACAGAGGTTGCAGTAGCTGGAGGTGTACATGCTCTAGTGATGCTTGCTCGTAACTGCAAATTTGAGGGAGTGCAAGAGCAGGCTGCTCGTGCATTGGCTAACTTAGCTGCTCATGGAGATAGCAACAGTAACAATGCTGCTGTTGGACAAGAAGCAGGTGCTCTTGAGGCTCTTGTTCAACTAACACGTTCTCCACATGAGGGTGTCAGGCAAGAAGCTGCTGGTGCACTTTGGAATTTGTCGTTTGATGATAGAAATCGAGAAGCCATTGCAGCAGCTGGTGGAGTACAGGCCTTGGTTACTCTTGCCCAATCTTGCTCTAATGCCTCCCCTGGACTTCAAGAGAGGGCTGCTGGTGCACTCTGGGGATTGTCAGTTTCTGAAGCTAATAGCATTGCCATTGGACGAGAAGGTGGTGTTGCGCCTCTGATTGCGCTGGCACGGTCTGAAGCAGAGCAGGATGTTCATGAAACTGCTGCCGGAGCACTATGGAATCTTGCTTTTAACCCTGGTAATGCTTTACGAATAGTGGAGGAAGGTGGAGTATCTGCACTTGTTGATCTCTGTTCTTCATCAGTGTCAAAAATGGCACGATTTATGGCTGCGTTAGCATTGGCTTACATGTTTGATGGGAGAATGGATGAATTTGCTTTAGTAGGCACCATGTCAGAAAGTACTTCTAAGAGTGTGAGCTTGGATGGAGCTAGAAGGATGGCTTTGAAACACATTGAAGCTTTTGTCCTTTCATTTTCTGCTCCACAAGCTTTTGCGGCTGCTGCTGCATCATCAGCTTCTGCAGCACTAGCACAGGTTACTGAAGGTGCTCGTATTCAAGAAGCAGGACATCTGAGATGCAGTGGTGCTGAAATTGGAAGATTTGTTGCTATGCTGCGGAATCCATCATCTATACTCAAAGCTTGTGCAGCATTTGCTCTTCTCCAGTTTACAATCCCTGGTGGACGACACGCCGTGCACCATGCCAGCCTCATGCAGAATGCAGGAGCAGCAAGAGTTCTGCGTGGTGCAGCCGCGGCAGCAACTGCACCAATAGAAGCAAAAATCTTTGCAAGAATTGTTCTTCGCAATCTTGAGTATCACCAGATAGAGCATACAGTGTAG 2760 0.4598 MSRRVRRKVAKKGKENVGLSSFPEIQGEVSDSERQGIVDWRCLPDDTVIQLLSCLSYRDRASLSSTCRTWKLLGSSPCLWTSLDLRSHRFDASMASSLAPRCMHLQKLRFRGAESADAIIHLRARNLREISGDYCRKITDATLAVVAARHEFLESLQLGPDFCERISSDAIKAIAHCCPRLSKLRLSGIRDVNADAINALAKHCPKLTDIGFIDCLNVDELALGNVSSVRFLSVAGTSSMKWGVVSHLWHKLPNLIGLDVSRTDIGPSAVSRLLSLSQNLRVLIALNCPILEEDTSFSASKYKSKLLISLSTDIFKGLASLFFGNTKRGKNVFLDWRTSTNNDKNLNEIIPWLEWMLSHTLLRSAESPQQGLDSFWVEQGGSLLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLGLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILAGLARSTNKLVAEEAAGGLWNLSVGEEHKGAIAKAGGIQALVDLIFKWSSSGDGVLERAAGALANLAADDKCSTEVAVAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVQALVTLAQSCSNASPGLQERAAGALWGLSVSEANSIAIGREGGVAPLIALARSEAEQDVHETAAGALWNLAFNPGNALRIVEEGGVSALVDLCSSSVSKMARFMAALALAYMFDGRMDEFALVGTMSESTSKSVSLDGARRMALKHIEAFVLSFSAPQAFAAAAASSASAALAQVTEGARIQEAGHLRCSGAEIGRFVAMLRNPSSILKACAAFALLQFTIPGGRHAVHHASLMQNAGAARVLRGAAAAATAPIEAKIFARIVLRNLEYHQIEHTV. 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00706 919 SMART fbox_2 43 83 IPR001810 GO:0005515
Seca2g00706 919 SUPERFAMILY RNI-like 41 293 - -
Seca2g00706 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 641 686 IPR000225 GO:0005515
Seca2g00706 919 FunFam Protein ARABIDILLO 2 355 502 - -
Seca2g00706 919 Gene3D Ribonuclease Inhibitor 33 313 IPR032675 -
Seca2g00706 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 685 728 IPR000225 GO:0005515
Seca2g00706 919 Pfam Armadillo/beta-catenin-like repeat 463 497 IPR000225 GO:0005515
Seca2g00706 919 Pfam Armadillo/beta-catenin-like repeat 592 628 IPR000225 GO:0005515
Seca2g00706 919 Pfam Armadillo/beta-catenin-like repeat 545 584 IPR000225 GO:0005515
Seca2g00706 919 Pfam Armadillo/beta-catenin-like repeat 676 714 IPR000225 GO:0005515
Seca2g00706 919 Pfam Armadillo/beta-catenin-like repeat 630 672 IPR000225 GO:0005515
Seca2g00706 919 Pfam Armadillo/beta-catenin-like repeat 500 542 IPR000225 GO:0005515
Seca2g00706 919 Pfam Armadillo/beta-catenin-like repeat 422 456 IPR000225 GO:0005515
Seca2g00706 919 SUPERFAMILY ARM repeat 368 746 IPR016024 -
Seca2g00706 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 600 642 IPR000225 GO:0005515
Seca2g00706 919 PANTHER PROTEIN ARABIDILLO 1 1 916 - -
Seca2g00706 919 SMART LRR_CC_2 150 177 IPR006553 -
Seca2g00706 919 SMART LRR_CC_2 124 149 IPR006553 -
Seca2g00706 919 SMART LRR_CC_2 178 203 IPR006553 -
Seca2g00706 919 SMART LRR_CC_2 204 229 IPR006553 -
Seca2g00706 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 554 585 IPR000225 GO:0005515
Seca2g00706 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515
Seca2g00706 919 SMART arm_5 589 629 IPR000225 GO:0005515
Seca2g00706 919 SMART arm_5 674 715 IPR000225 GO:0005515
Seca2g00706 919 SMART arm_5 417 457 IPR000225 GO:0005515
Seca2g00706 919 SMART arm_5 716 757 IPR000225 GO:0005515
Seca2g00706 919 SMART arm_5 630 673 IPR000225 GO:0005515
Seca2g00706 919 SMART arm_5 543 584 IPR000225 GO:0005515
Seca2g00706 919 SMART arm_5 458 498 IPR000225 GO:0005515
Seca2g00706 919 SMART arm_5 499 542 IPR000225 GO:0005515
Seca2g00706 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 511 IPR000225 GO:0005515
Seca2g00706 919 Gene3D - 382 503 IPR011989 -
Seca2g00706 919 Gene3D - 591 678 IPR011989 -
Seca2g00706 919 Gene3D - 504 590 IPR011989 -
Seca2g00706 919 Gene3D - 679 766 IPR011989 -
Seca2g00706 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 510 555 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00706 Seca-Chr2 10584360 10596078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00706 571 759 U-box Gene Family AT2G23140 35.789 2.72e-19 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00706 - - gmx:100819086 1558.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00706 2 10584360 10596078 Seca2g00706 2 10584360 10596078 ECH