Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00686 ATGGGGTTTAGGAATAATGCAATTCAGGCAGGGAGTTTGGATGTGGGAAAGTCAAAGGGAAGGATGAATAGGGATGTTGCTGAGGAGGAGATTGGATGTTGTGTTAATTTTAGTTTCATTGGGAGGTGTATACCTTCAAGATCAAAGGTTAATAGCTCCATAAGTGGCATCAGTGCTCACAGTGTGGAAAAAACATCTGCATCTGAAAAAAGCAAAACGGAAACAAGTGCTCCCCCAGGGTCCTCTACAACAACTAGTAATATAGGAAGTATCCCATCAACTCCAAAATTCAGTGAGGAGTTGAAGGTTTCTTCTCGTTTGAGAAAATTCACATTCAATGAGCTTAAGTTGGCAACTAGGAATTTCAGGCCAGAGAGTCTTCTTGGCGAGGGAGGTTTTGGTTGTGTCTTCAAGGGTTGGATTGAGGAGAATGGAACTGCACCTGTGAAACCAGGTACTGGGCTTACTGTCGCAGTGAAGACCCTCAACCATGATGGACTTCAGGGTCACAAAGAGTGGCTTGCTGAGTTAAACATTCTCGGTGACCTTGTTCATCCGAATCTGGTTAAATTGATTGGTTTCTGTATTGAAGATGACCAAAGATTGTTGGTTTATGAGTTTATGCCCCGTGGAAGTTTGGAGAACCACCTCTTCAGAAAAGGGTCCTTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCAGCCAAAGGTCTTGCTTTTCTCCATGAAGAAGCTCAGAGGCCTATAATCTATCGCGATTTCAAGACATCTAATATTCTGTTAGATGCGGAATACAATGCAAAGCTCTCTGATTTTGGACTCGCCAAAGATGGTCCTGAAGGGGAAAAGACACACATATCAACAAGAGTTATGGGAACATATGGTTATGCAGCTCCTGAGTATGTGATGACTGGTATCATGGTGAAATAA 939 0.4281 MGFRNNAIQAGSLDVGKSKGRMNRDVAEEEIGCCVNFSFIGRCIPSRSKVNSSISGISAHSVEKTSASEKSKTETSAPPGSSTTTSNIGSIPSTPKFSEELKVSSRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELNILGDLVHPNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHISTRVMGTYGYAAPEYVMTGIMVK. 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00686 312 MobiDBLite consensus disorder prediction 71 93 - -
Seca2g00686 312 FunFam Serine/threonine-protein kinase BIK1 90 207 - -
Seca2g00686 312 PANTHER OS01G0588500 PROTEIN-RELATED 73 310 - -
Seca2g00686 312 ProSitePatterns Protein kinases ATP-binding region signature. 128 160 IPR017441 GO:0005524
Seca2g00686 312 FunFam Os07g0541700 protein 208 296 - -
Seca2g00686 312 SUPERFAMILY Protein kinase-like (PK-like) 91 308 IPR011009 -
Seca2g00686 312 Gene3D Transferase(Phosphotransferase) domain 1 208 311 - -
Seca2g00686 312 ProSiteProfiles Protein kinase domain profile. 122 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00686 312 Pfam Protein kinase domain 125 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00686 312 Gene3D Phosphorylase Kinase; domain 1 102 207 - -
Seca2g00686 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Seca2g00686 312 MobiDBLite consensus disorder prediction 61 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00686 Seca-Chr2 10286912 10292080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00686 80 310 Glycoside Hydrolase AT3G07070 51.852 2.48e-78 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca2g00686 Pkinase 2.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00686 - - gmx:100305393 561.607