Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00682 ATGACAGGAATTAAGGTTACCTTTATTATCCTCTTGGTGGCTTTTGCAATTACTATTCCACGTCTTGAGGCTGGCATTGCTGAGTTTGATGATTTTCTCAAAGCACAAGCTGATGAGGCACATGAAATTGCTCTTAAGTCCTATGTGCCCAACCCTGAAAACATGAAAGACGAGCTTAATGTAAATGTTCATTTGGGGGAACCTGAGACACATGTGGATGAAAAGCAAGATCATGACAAGGTTACAAATGCATAA 255 0.4 MTGIKVTFIILLVAFAITIPRLEAGIAEFDDFLKAQADEAHEIALKSYVPNPENMKDELNVNVHLGEPETHVDEKQDHDKVTNA. 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00682 84 Pfam Pectate lyase, N terminus 26 65 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00682 Seca-Chr2 10250600 10250854 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00682 8 79 Polysaccharide Lyase AT2G02720 29.167 1.38e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00682 - K01728 gmx:100780236 90.1225