Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00680 ATGAGCATGAGAAAGAAATCCATGGCAGAAGGTGAGCTCCAAGGAGCAAGGTGTGTCAAGAGACGACGAAATACTGGCAATGATATTGATAACCAAAATCAGAAGCTGTCACAGCAACAAGTTGGTGAAAATTCTACTACCAATACTAACTCTACAAAGAGAAGCTCAAGATTTCGTGGAGTTAGCAGGCATAGATGGACTGGTCGATTTGAAGCACACTTGTGGGACAAGCTATCTTGGAACATAACACAAAAGAAGAAAGGGAAGCAAGATATTGCAGGGGCTTATGATGAAGAAGAATCTGCTGCCAGAGCATATGATTTAGCTGCACTTAAGTATTGGGGAACATCTACTTTCACCAATTTTCCGATATCAGATTACGAGAATGAGATAGAAATAATGCAGACTATGACCAAAGAGGAGTACTTGGCCACTTTAAGGAGGAAGAGCAGTGGCTTTTCAAGAGGCGTCTCAAAGTATAGGGGTGTTGCAAGGCACCACCATAATGGTAGATGGGAAGCAAGGATAGGAAGGGTTTTTGGAAACAAATACCTCTACCTTGGCACCTACAGTACCCAAGAGGAAGCTGCTCGTGCTTATGATATAGCAGCCATTGAGTATAGAGGGATTCATGCTGTAACGAATTTTGATTTAAGTACTTACATAAAATGGTTAAAGCCTAAAAGAGGAAGCACCCCATATACAAAACTTGAATCACAGACAGTATTGTTAGAGTCTCAAACAGTGGCTTCCCCACCTAACAGAACTCTGATAGAAGAATCAAAGTCCTTGGCACTTCACAACAGTATTTTCAGTAGAGATTACCTACATTTCCCTGAAAAGCAAGAAGTATTTGGAAACAAAACCTACCAATTCTCAAGCAATAAGTCATCTTCTCCCACTGCACTTGGCCTTCTTCTCCGCTCTTCTCTATTCCGAGAATTAGTTGAAAAGAACTCAAATGTGTCTGAAGATGAAACTGATGGGGAAGTCACAAAGGAGCAAAACCAACAGATAGCTAGTGATGATGAGCTTGGTGGAATCTTCTATCCTGGCATTGGTGATATCCCATTTGTCAGTGATCCTAACAGATACAACTTAGAATTACAAGAAAGAGACTTGCATTCAATATTTTGA 1137 0.4072 MSMRKKSMAEGELQGARCVKRRRNTGNDIDNQNQKLSQQQVGENSTTNTNSTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNITQKKKGKQDIAGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYENEIEIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFDLSTYIKWLKPKRGSTPYTKLESQTVLLESQTVASPPNRTLIEESKSLALHNSIFSRDYLHFPEKQEVFGNKTYQFSSNKSSSPTALGLLLRSSLFRELVEKNSNVSEDETDGEVTKEQNQQIASDDELGGIFYPGIGDIPFVSDPNRYNLELQERDLHSIF. 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00680 378 CDD AP2 56 125 IPR001471 GO:0003700|GO:0006355
Seca2g00680 378 SUPERFAMILY DNA-binding domain 158 219 IPR016177 GO:0003677
Seca2g00680 378 ProSiteProfiles AP2/ERF domain profile. 159 217 IPR001471 GO:0003700|GO:0006355
Seca2g00680 378 SUPERFAMILY DNA-binding domain 56 125 IPR016177 GO:0003677
Seca2g00680 378 ProSiteProfiles AP2/ERF domain profile. 57 123 IPR001471 GO:0003700|GO:0006355
Seca2g00680 378 CDD AP2 158 219 IPR001471 GO:0003700|GO:0006355
Seca2g00680 378 Gene3D AP2/ERF domain 158 219 IPR036955 GO:0003700|GO:0006355
Seca2g00680 378 Gene3D AP2/ERF domain 56 125 IPR036955 GO:0003700|GO:0006355
Seca2g00680 378 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 35 287 - -
Seca2g00680 378 MobiDBLite consensus disorder prediction 1 60 - -
Seca2g00680 378 SMART rav1_2 57 129 IPR001471 GO:0003700|GO:0006355
Seca2g00680 378 SMART rav1_2 159 223 IPR001471 GO:0003700|GO:0006355
Seca2g00680 378 MobiDBLite consensus disorder prediction 29 56 - -
Seca2g00680 378 PRINTS Ethylene responsive element binding protein signature 199 219 IPR001471 GO:0003700|GO:0006355
Seca2g00680 378 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Seca2g00680 378 Pfam AP2 domain 158 209 IPR001471 GO:0003700|GO:0006355
Seca2g00680 378 Pfam AP2 domain 56 115 IPR001471 GO:0003700|GO:0006355
Seca2g00680 378 FunFam AP2-like ethylene-responsive transcription factor 158 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00680 Seca-Chr2 10223717 10226119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00680 53 252 AP2-EREBP Transcription Factor Family AT5G57390 58.879 1.24e-81 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca2g00680 AP2 4.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00680 - - gmx:100792612 589.726