Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00677 ATGTACGGATTCGAAGCTCTCACCTTCAACATCCACGGCGGTTACCTTGAGGCCATCGTCAGGGGCCACCGCGCCGGTTTGCTCACCACCGCCGATTACAACAATCTCTGCCAATGCGAATCCCTCGATGACATCAAGATGCACCTTTCCGCCACCGAGTATGGCCCTTACCTCCAAAACGAGCCTTCTCCATTGCATACCACCACAATTGTGGAGAAATGTACTCTTAAGCTGGTTGATGATTACAAGCACATGCTGTGCCAAGCCACAGAACCCCTTTCAACCTTTTTAGAATATATCACATATGGTCACATGATAGACAATGTTGTTTTGATTGTTACTGGAACCTTGCATGAGAGAGATGTTCAAGAACTACTTGAAAAATGCCATCCACTGGGCATGTTTGACAGTATTGCTACTCTGGCAGTTGCTCAGAATATGCGGGAGCTTTACAGGCTGGTTCTTGTTGACACTCCTCTGGCTCCATATTTTTCTGAGTGCATTACATCAGAGGACTTGGATGATATGAACATTGAAATAATGAGGAACACTCTTTACAAAGCATACCTTGAAGACTTTTACAAATTTTGTCAGAAACTTGGTGGTGCCACTGCTGAGATAATGTCAGACCTTCTAGCTTTTGAGGCTGATAGAAGGGCTGTGAATATTACCATAAATAGCATTGGTACTGAGCTTACCAGAGATGACCGTAGAAAACTGTACTCTAACTTTGGTTTGCTCTATCCATATGGTCATGAGGAACTTGCTGTCTGTGAGGACATAGATCAGATGCTTGACAAGGCATTCTATGAGGAGGAGGTGAAGAGGCTTTGCCTGGCGTTTGAGCAACAGTTTCACTATGCTGTTTTCTTCGCATATATGAGGTTAAGGGAACAGGAAATCAGGAACCTAATGTGGATTTCAGAATGTGTGGCTCAGAATCAGAAATCCAGAGTTCATGACAGTAAAGGCTTTGTCATTAGTAAGTTTGCTTCTTATAATCCTTTGAGTTATCCTAAAATAGCATCTTGGAATGGAAGCACAGATTGCTGCTCATGGGATGGCATTGAATGTGATGAGCAGAGAGGCAATGTGATTGGTGTTGATCTTAGTAGCAGCCACCTCTTTGGTTCAATGGATGCTAATACCACTCTCTTTCACCTTCCACACCTTCAAAGGCTTAATCTTGCTGATAATGACTTCAATTACTCTCAAATCCCATCCACCATAGGTGAGCTTTCAAAGCTAAGATATCTGAACCTTTCTCAAACCAAAATTTCTGGTGAAATCCCACACCAAGTTTCACATTTGTCCAAGTTACTGTCTCTTGATCTATCCATAAGCACTGTAGATAACCTTTTGCGACTCAAAACATCCACTCTGAGAAGCTTAATTCAAAATTCAACTAGTCTTGAAATTCTTCGTCTTCATTATGTCACCATTTCATCGTCTGTACCTCATATACTCACAAATCTTACATCTTTGCAAAGCTTACTTCTTTATCATTGTGATTTGTATGGTGAATTTCCAGCTGGAATATTTCATCTTCCAAACTTGAGACAAATTGATGTTGGATATAACCAAGATCTCACGGGTAATATTCCTGATTTTCACTCAAGTCCACTCATTAGCTTGTTACAACTCGCTGGCACAAGTTTCTATGGTACACTACCTGCGTCTATTGGAAAGCTTAAATCTTTAGAAAAGTTGTCAATTTCACAATGCAAATTTTCAGGGTCTATTCCTTCTTCACTCGGAAACCTTACTCAGCTTACTTTCTTAGGACTTGGATACAACAAATTTAAGGGCCACCTTTCTTCATGCTTGCAAAATCTTACAAAATTACAGACCCTGGATGTTGGTTTCAATGAATTTACTATTGAAAGTGAGACCATCTCAAGGATTTGTAAGCTGTCAAAGATCAATGTTTTGGTTTTAAGCTTTCTAAATCTTAACAGCGAGATCCCACCATGTTTTGTGAATCTCACCCAGATATCAATGCTATCTCTATCTAATAGCAATTTAGGTGGTGAAATTCCATCTTGGATAATGAACCTAACCAATTTATGTTACTTGGCTCTTGAAGAGAATAATCTTAAGGGTAAAATACCAGACTCTCTCTTCCAGCTAGAGATCCTAGAACTTCTTTCTCTAGGCAATAATTCGTTGCAAGGGGAACTAGAGCTTGACAAGTTTCTGAATCTCAAGAAGCTCATTTATGTTGATTTATCTTTCAACAAAATTTCATTAATTAGAGGGAAAAATCCTTCCAATGCAACCTTTCCTCAAATTCAAGTGTTAAATCTGGCTTCATGCAATTTGGTTGAGTTTCCAAAATTTTTAGGAGACCTAAATGAGTTGACATCTCTTTACATGCCATACAATTCATTGACAGGAAAAATTCCCCCTTTGATATGCAATTTTAAATTTCTTGTGCATCTTGATTTGTCGTTTAACAACTTAAGCGGCATGGTTCCCACATGTTTGGGAAATTTTAGCCAATCTCTGGAAATTTTGATGCTACAAGGAAACAAATTATCTGGACTCATCCCTCAAACATATATGATGAAAAGTTCCTTGAAAATGATTGATTTAAGCAATAACAATCTGCAGGGTCAGTTGCCAAGAGCAATGGTCAATTGTAGAATGCTTGAGTATCTTGATGTCAGCTATAACCAGATTAATGATTCATTTCCTTTCTGGCTGGGAGCTCTTCCTGAGTTGAAAGTTATTGCTTTGCATCATAATCAATTGCATGGGCCTATATGGTGCCCTATGACATGCACATTTCCCAAACTTCACATCATTGTGCTCTCTCACAATGAGTTCTCTGGAAGTTTGCCTTCAGAAATAATCCAGACCTGGAAATCCATGAAAACTTCCAATATGAGTCAGTTACAGTATGAGCATTCAACCTGGAAGTGGATAGGAAGGTACAACTGGACTGAAAGTGATAATTATTCTTTCACAATGTTTAACAAAGGGATGGTCATGGTTTATGAGAGGCTGCAAAAATTTTACAACTTGATAGTTATTGATCTTTCAAGTAACAGAATCTCTGGAGAGATTCCAGATGTCATAGGAGACTTAAAGGGCCTTGTTTTGCTCAACCTTTCCAACAACATGCTAACTGGAAGAATTCCATCTTCATTGGGGAAGCTTTCAAACCTTGAAGCATTGGACCTTTCTCTCAATAGTTTATCAGGGAAGATTCCCCAACAATTAACAGAACTCACATTTCTGTCATTCCTTAATGTGTCCTTTAATAATCTCTCAGGTCCTATACCACAAAATAAGCAATTTGCTACATTTGAAGGTAATTCATTTGAGGGAAACCAAGGTCTTTGTGGGAATCAGTTGTTGAAGAAATGTGTAGATCATGCAGGGCCTTCATTTGATACACCTTCTGCCTCTGATGGTGACCAAGACTCAGGATCTTTCCTTGAGTTTGACTGGAAAGTAGTTTTGATTGGGTATGGGGGTGGGCTTGTTGCAGGAGTGGCATTGGGAAGCACTTTTAGTCCAGAGATACTTGGATGGCTTAAAGAAAAGGGTCTTTTCTTTAAATAG 3570 0.3936 MYGFEALTFNIHGGYLEAIVRGHRAGLLTTADYNNLCQCESLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDDYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQMLDKAFYEEEVKRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSKGFVISKFASYNPLSYPKIASWNGSTDCCSWDGIECDEQRGNVIGVDLSSSHLFGSMDANTTLFHLPHLQRLNLADNDFNYSQIPSTIGELSKLRYLNLSQTKISGEIPHQVSHLSKLLSLDLSISTVDNLLRLKTSTLRSLIQNSTSLEILRLHYVTISSSVPHILTNLTSLQSLLLYHCDLYGEFPAGIFHLPNLRQIDVGYNQDLTGNIPDFHSSPLISLLQLAGTSFYGTLPASIGKLKSLEKLSISQCKFSGSIPSSLGNLTQLTFLGLGYNKFKGHLSSCLQNLTKLQTLDVGFNEFTIESETISRICKLSKINVLVLSFLNLNSEIPPCFVNLTQISMLSLSNSNLGGEIPSWIMNLTNLCYLALEENNLKGKIPDSLFQLEILELLSLGNNSLQGELELDKFLNLKKLIYVDLSFNKISLIRGKNPSNATFPQIQVLNLASCNLVEFPKFLGDLNELTSLYMPYNSLTGKIPPLICNFKFLVHLDLSFNNLSGMVPTCLGNFSQSLEILMLQGNKLSGLIPQTYMMKSSLKMIDLSNNNLQGQLPRAMVNCRMLEYLDVSYNQINDSFPFWLGALPELKVIALHHNQLHGPIWCPMTCTFPKLHIIVLSHNEFSGSLPSEIIQTWKSMKTSNMSQLQYEHSTWKWIGRYNWTESDNYSFTMFNKGMVMVYERLQKFYNLIVIDLSSNRISGEIPDVIGDLKGLVLLNLSNNMLTGRIPSSLGKLSNLEALDLSLNSLSGKIPQQLTELTFLSFLNVSFNNLSGPIPQNKQFATFEGNSFEGNQGLCGNQLLKKCVDHAGPSFDTPSASDGDQDSGSFLEFDWKVVLIGYGGGLVAGVALGSTFSPEILGWLKEKGLFFK. 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00677 1189 Gene3D Ribonuclease Inhibitor 454 539 IPR032675 -
Seca2g00677 1189 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 536 628 - -
Seca2g00677 1189 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 631 1125 IPR046956 -
Seca2g00677 1189 Gene3D Ribonuclease Inhibitor 633 714 IPR032675 -
Seca2g00677 1189 SUPERFAMILY RNI-like 634 961 - -
Seca2g00677 1189 Gene3D Ribonuclease Inhibitor 715 1129 IPR032675 -
Seca2g00677 1189 Gene3D - 206 285 IPR035067 -
Seca2g00677 1189 Pfam Leucine rich repeat 835 894 IPR001611 GO:0005515
Seca2g00677 1189 Gene3D Ribonuclease Inhibitor 540 632 IPR032675 -
Seca2g00677 1189 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 632 727 - -
Seca2g00677 1189 FunFam V-type proton ATPase subunit 91 205 - -
Seca2g00677 1189 SUPERFAMILY RNI-like 369 745 - -
Seca2g00677 1189 Pfam ATP synthase (C/AC39) subunit 16 320 IPR002843 GO:0046961
Seca2g00677 1189 PRINTS Leucine-rich repeat signature 811 824 - -
Seca2g00677 1189 PRINTS Leucine-rich repeat signature 1054 1067 - -
Seca2g00677 1189 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 750 972 - -
Seca2g00677 1189 Pfam Leucine rich repeat N-terminal domain 339 359 IPR013210 -
Seca2g00677 1189 Gene3D - 91 195 IPR035067 -
Seca2g00677 1189 Gene3D ATP synthase (C/AC39) subunit, domain 3 14 309 IPR044911 -
Seca2g00677 1189 SMART LRR_typ_2 735 758 IPR003591 -
Seca2g00677 1189 SMART LRR_typ_2 612 635 IPR003591 -
Seca2g00677 1189 SMART LRR_typ_2 588 611 IPR003591 -
Seca2g00677 1189 SMART LRR_typ_2 1054 1082 IPR003591 -
Seca2g00677 1189 SMART LRR_typ_2 808 831 IPR003591 -
Seca2g00677 1189 SMART LRR_typ_2 761 784 IPR003591 -
Seca2g00677 1189 SMART LRR_typ_2 492 516 IPR003591 -
Seca2g00677 1189 SMART LRR_typ_2 388 413 IPR003591 -
Seca2g00677 1189 SMART LRR_typ_2 686 710 IPR003591 -
Seca2g00677 1189 SMART LRR_typ_2 1006 1030 IPR003591 -
Seca2g00677 1189 SUPERFAMILY V-type ATP synthase subunit C 14 320 IPR036079 -
Seca2g00677 1189 FunFam V-type proton ATPase subunit 14 128 - -
Seca2g00677 1189 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 993 1128 - -
Seca2g00677 1189 Gene3D Ribonuclease Inhibitor 328 453 IPR032675 -
Seca2g00677 1189 SUPERFAMILY L domain-like 1003 1114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00677 Seca-Chr2 10149274 10157855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00677 1 322 Primary Pumps ATPases(2) AT3G28710 89.595 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00677 - - gmx:100782169 1136.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00677 2 10149274 10157855 Seca2g00677 2 10149274 10157855 ECH