Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00660 ATGATTGGGAGAGCTCTGGAATTGGAGGTCTGTTTTGAAGTCCTGCACGATCTCACAGAGAGGCACCGTCCCTGGGCTGAAACGATGAGGCTTCTTCACACCGCCAGTTTCCAGAGCAGATTAACGAGCGACCTTCATCACCAGCTGCTTCTTAGGAGCCTTGCCACAGATGAACTTGCGAAGATGGAGTCGTTGGGACAGTGGAACCTGCTTCTATCGTTTTCAAGGTTAGAAATCTGTTTCAAATCATTGTCGGCGTCCACGCCGCTGGATCCGCCGTCTTCGCCCAAGCCATCCCCAGCCTTCTGGTGTTTCCTCAACTCCGCGATGTCGCGCAAGAAATCGTTGGTCTGTCCCTTTGTCATATCGCTATCCACTTTGAACAAAATCCGATTTACAAAGAAGGATATCACTGCTCAAATAATATCTGCTAGCATTGTCGGTGACATTGTTCTTGCTACAACATATGCGCATGAACTGCCACGCTATGGTCTTGAAGTAGGTCTTACAAATTATGTTGCAGCCTATTGCACTGGACTCCTCTTGGGTCGTAAATTTCTTAAAATGCTTGAAATGGATGAGGAGTACGGGGGCAATGTAGAGGCTTCTAGAGGTACTGCTAGTACCCTGTCCCTTTTATTTGTATTTTCCCTTGATTATGCTCGGTTGGTGTTTGATAAAATGTCTGGAATTTCACTCTGTTTGAATGGTTATGATGATTTCACTGCCAGTCTTCCTGCTAGTGACTGTCAATATGCTGTTTATGATTTTGATTTTTTCACTGAAGAGAATTTTTAG 798 0.4524 MIGRALELEVCFEVLHDLTERHRPWAETMRLLHTASFQSRLTSDLHHQLLLRSLATDELAKMESLGQWNLLLSFSRLEICFKSLSASTPLDPPSSPKPSPAFWCFLNSAMSRKKSLVCPFVISLSTLNKIRFTKKDITAQIISASIVGDIVLATTYAHELPRYGLEVGLTNYVAAYCTGLLLGRKFLKMLEMDEEYGGNVEASRGTASTLSLLFVFSLDYARLVFDKMSGISLCLNGYDDFTASLPASDCQYAVYDFDFFTEENF. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00660 265 Gene3D - 125 238 - -
Seca2g00660 265 CDD Ribosomal_L18_L5e 130 189 - -
Seca2g00660 265 SUPERFAMILY Translational machinery components 130 189 - -
Seca2g00660 265 PANTHER RIBOSOMAL PROTEIN L5-RELATED 130 203 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca2g00660 265 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 130 204 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca2g00660 265 PRINTS Ribosomal protein L5 signature 161 181 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca2g00660 265 PRINTS Ribosomal protein L5 signature 237 256 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca2g00660 265 SUPERFAMILY Actin depolymerizing proteins 235 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00660 Seca-Chr2 9906718 9907515 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00660 130 203 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 77.027 1.12e-34 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00660 K02932 - bvg:104902357 127.487