Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00657 ATGGCTTTAGCAGTTCCCAATTATATGGTGTTAGAAGCATGGTGCATTGTACTTGTTATTATCTCTTGGACTAGTTTCTGCACTGCAATTAAATCTGAATCATCACCACTAGACATAGAAGCAAAAGCTCTGCTAGAAAGTGAGTGGTGGAGTGACTACACTAATCATGTTCCAAGTCGTTGTCAGTGGCCAGGTATTACATGCAATAATGATGGAAGCATTACAAACATTACTTTGCCAGCTGAAATTCAATTGGGAGACAAGTTCAGAAGGTTCAACTTCTCTTCCTTTCCAAACCTTGTTCACCTCAATCTTGCTTCACATGGACTCACTGGGAGCATCCCTTATGAACTAGGTACCCTTTCCAAACTTATTTATCTTGACCTCTCTTCTAATGATATTCAGGGTCTTATACCATCAAATATTTGGAATCTAAGGAATCTGGTAACCCTGAATCTGGCCAGAAACAGGCTTAATGGTTCAATTCCATCTTCTGTTGGTCAGTTGACTAAATTGACCTCTCTGTTTCTTGATACCAATCTAATTAGTGGGTCTATTCCTCCAGAGTTAGGAAGGCTGAAAAATCTGATTCAGTTGGGTCTGAATAACAATAGTTTAATTGGTCAAATACCTGTGGAGATTGGTCTATTGAACAGTTTGACATATCTGTCCCTCAGTGTCAACAAGTTGAATGGTTTTATACCTTTAGAAATAAGGAATTTGAAAAACCTTATTTTTCTTGATCTTAATACTAACAATCTCACTTGTGAGATACTTTCAGTTTTGCATAATCTTACCAATTTGACTGAACTAAACTTGTCCAACAATGAGATTTCTGGTATGGTCCCAAGTGAGCTTACCCAATTGACCCAACTTGAGCATCTGAATATTTCAGATAACAAAATTTTTGGTGTAATACCTCCTGAGATTGGGAAATTGTCCAAACTCTTGGTTCTAGACCTGTCTAGAAACATGTTAACTGGAGAAATCCCTGTCAGTCTTTCAAGTTGCTCTAACCTGCAGGTATTGAGTTTGAGCTATAACAACATAACAGGAAGCATTCCCTCTCACATTGGTGACCTTGCTAAACTTGATTTAATTGATTTGAGTCATAACTCAATCAGTGGAGAAATACCTTACCAACTAGGGAATGTGAAATACACAAGGGTCTTGGATCTCAGTTATAATCAACTCACTGGAACCATTCCCAGTTCCCTAGTACTACTGAGGATGATAAACTTGTCCTACAATTCTCTAGAGGGTGAGATCCCAGTTAGTCTCCAAAATTCTTTTGCATCTGATGCATTCATTGGCAATGACCATTTATGTGGCCAAATCAGATCCTTTCCTACTCATTGCTCCTCTTTTGCTAGAACAAATAATAGAGTCAGGACACATAAGAAGATTTTCCTTCCTCTCACAGCTTTTCTTGCTCTTCTATGCTCTTTGTATTTGTTCCTCCAATGGCACAATGCTAGGAAATCCAAGTCACATACAAAAGCAATAAAGAATGGTGACTTGTTCTCAATATGGAACTATGATGGTAAAATTGCATATGAAGACATAATTGAAGCAACAGAAGGTTTTAACATCAAATACTGCATAGGTACTGGTGGATATGGTAGTGTCTACAAAGCACAGCTACCAAGTGGTAGAGTAGTGGCCTTAAAGAAACTCCACAATTTAGAAGCCAATGAACCAGAAATCCGTAAGATTTTCAAGAATGAGGTGAGAATGTTGACAAAGATTAGGCATAGAAATATTGTGAAGCTTTATGGATTCTGTTTGCACAACAGATGCATGTTTCTGGTATTGGAATACATGGAAAAGGGAAGCTTATATTATGTTTTACACAATGACATTGAAGCTGTGGAGTTAGATTGGACCAAAAGGGTTAACATTGTGAAAAGCATAGCACATAGCTTATCATATCTTCATTATGATTGTAAGCCAGCAATTATTCACAGAGATGTAACAACCAAGAATGTTCTCTTGAATTCAGAAATGGAGGCTTGTCTTTCTGACTTTGGCATAGCAAGGCTTCTCAATTCTAGTTCCACCATTCGAACAGTACTTGCTGGTACTTACGGGTATATTGCACCAGAACTTGCCTATACTGATTCTGTGACTGAGAAATGTGATGTCTACAGCTTTGGAGTGGTTGCACTTGAAATCATAATGGGAAAGCATCCTGGAGAACTTGTTTCTTCATTAACATCAGAATCCACTCAAAACATTCTCTTTAAAGATATATTAGACAAGAGACTAATATCTACCATCAATCAACAATCTGCTCAGAGTTTAGTTCTTGTAGCAGCAGTAGCCTTTGCATGTGTTCAATCTCTGCCAATTTGTAGGCCAACAATGCAAGCAGTGGTTGACTTACTTGTTACAGGGAAGCCCCGATTAACCAAACCTTTTGAGGAAATTTCAATAAGTCAGATGGTAAATCATGAATTGTAA 2463 0.3784 MALAVPNYMVLEAWCIVLVIISWTSFCTAIKSESSPLDIEAKALLESEWWSDYTNHVPSRCQWPGITCNNDGSITNITLPAEIQLGDKFRRFNFSSFPNLVHLNLASHGLTGSIPYELGTLSKLIYLDLSSNDIQGLIPSNIWNLRNLVTLNLARNRLNGSIPSSVGQLTKLTSLFLDTNLISGSIPPELGRLKNLIQLGLNNNSLIGQIPVEIGLLNSLTYLSLSVNKLNGFIPLEIRNLKNLIFLDLNTNNLTCEILSVLHNLTNLTELNLSNNEISGMVPSELTQLTQLEHLNISDNKIFGVIPPEIGKLSKLLVLDLSRNMLTGEIPVSLSSCSNLQVLSLSYNNITGSIPSHIGDLAKLDLIDLSHNSISGEIPYQLGNVKYTRVLDLSYNQLTGTIPSSLVLLRMINLSYNSLEGEIPVSLQNSFASDAFIGNDHLCGQIRSFPTHCSSFARTNNRVRTHKKIFLPLTAFLALLCSLYLFLQWHNARKSKSHTKAIKNGDLFSIWNYDGKIAYEDIIEATEGFNIKYCIGTGGYGSVYKAQLPSGRVVALKKLHNLEANEPEIRKIFKNEVRMLTKIRHRNIVKLYGFCLHNRCMFLVLEYMEKGSLYYVLHNDIEAVELDWTKRVNIVKSIAHSLSYLHYDCKPAIIHRDVTTKNVLLNSEMEACLSDFGIARLLNSSSTIRTVLAGTYGYIAPELAYTDSVTEKCDVYSFGVVALEIIMGKHPGELVSSLTSESTQNILFKDILDKRLISTINQQSAQSLVLVAAVAFACVQSLPICRPTMQAVVDLLVTGKPRLTKPFEEISISQMVNHEL. 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00657 820 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 234 456 - -
Seca2g00657 820 Gene3D Transferase(Phosphotransferase) domain 1 608 808 - -
Seca2g00657 820 SUPERFAMILY Protein kinase-like (PK-like) 511 796 IPR011009 -
Seca2g00657 820 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 238 797 - -
Seca2g00657 820 Pfam Leucine rich repeat 98 158 IPR001611 GO:0005515
Seca2g00657 820 Pfam Leucine rich repeat 262 302 IPR001611 GO:0005515
Seca2g00657 820 Pfam Leucine rich repeat 315 374 IPR001611 GO:0005515
Seca2g00657 820 ProSitePatterns Tyrosine protein kinases specific active-site signature. 653 665 IPR008266 GO:0004672|GO:0006468
Seca2g00657 820 SUPERFAMILY RNI-like 93 434 - -
Seca2g00657 820 ProSiteProfiles Leucine-rich repeat profile. 339 361 IPR001611 GO:0005515
Seca2g00657 820 ProSiteProfiles Protein kinase domain profile. 529 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00657 820 Gene3D Ribonuclease Inhibitor 33 189 IPR032675 -
Seca2g00657 820 FunFam MDIS1-interacting receptor like kinase 2 608 802 - -
Seca2g00657 820 FunFam Nuclear pore complex protein NUP107 28 187 - -
Seca2g00657 820 Gene3D Ribonuclease Inhibitor 201 454 IPR032675 -
Seca2g00657 820 ProSitePatterns Protein kinases ATP-binding region signature. 535 557 IPR017441 GO:0005524
Seca2g00657 820 ProSiteProfiles Leucine-rich repeat profile. 267 288 IPR001611 GO:0005515
Seca2g00657 820 SMART LRR_typ_2 289 312 IPR003591 -
Seca2g00657 820 SMART LRR_typ_2 265 288 IPR003591 -
Seca2g00657 820 SMART LRR_typ_2 338 361 IPR003591 -
Seca2g00657 820 SMART LRR_typ_2 121 144 IPR003591 -
Seca2g00657 820 SMART LRR_typ_2 145 169 IPR003591 -
Seca2g00657 820 SMART LRR_typ_2 193 217 IPR003591 -
Seca2g00657 820 SMART LRR_typ_2 313 337 IPR003591 -
Seca2g00657 820 PRINTS Leucine-rich repeat signature 124 137 - -
Seca2g00657 820 PRINTS Leucine-rich repeat signature 265 278 - -
Seca2g00657 820 FunFam Leucine-rich repeat receptor protein kinase MSP1 492 607 - -
Seca2g00657 820 Pfam Protein kinase domain 532 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00657 820 Gene3D Phosphorylase Kinase; domain 1 489 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00657 Seca-Chr2 9830899 9834200 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00657 98 701 Receptor kinase-like Gene Family AT4G08850 37.447 4.15e-135 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca2g00657 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00657 - - aprc:113863342 1168.68