Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00652 ATGGATAAAGGACAATTGGATTATTTTGCCAGGCCTAGTCCCATCCCAAAAGGTATCAGTCCTTATGCTCTAATAGGCAACAAGGAAGTATGTATCGACATTTCGTATCTCCAATTCCAACCTTGTTCATCTCACAGCAACACAAGTAACAAAGTAGTGCACAATCTAGTCATAGTTCTTCCTATCCTCATTTTTCTAATCTTGATCTTCGCACTACTTGTGTGTCTAAAGCTTCGTCTTGTTGCAACCAAGAAAAAACATGAAAACACAGTGACAACTAAGAATGGGGATTTGTTCTGCATATGGAACTATGATGGAAATATAGCATATGAAGACATCATTAGAGCAACTGAGGACTTTGACATGAAATACTGCATTGGAACGGGAGCATATGGGAGTGTTTACAAGGCACTATTACCTGGTGTTGAAGCAGAGGTGGAAACTATTGATAAGAGTTTTAGAAATGAAGTGAGGGTATTATCAGAAATTAAGCATCGGAATATTGTGAAGCTTTATGGATTCTGCTTGCATAAAAGAATCATGTTTTTGATCTATCAATACATGGAGAAAGATGATGCAGAAGCAATGGAATTGGATTGGAAAAAGAGGGTTGACATTGTCAAAGGCATTGCACATGCTCTATCATATCTTCATAATGATTGCAACCCTCCAATAGTGCATAGAGATATAGCTACCACCAATATCTTGCTTAACTCTGAGTGGCAGCCTAGTGTTGCAGACTTTGGCACATCCAGACTCCTCAAACATGATTCATCTAATCAAACTATAGTTGCTGGAACCATTGGATATATAGCTCCGGAGCTTGCCTACACAATGGTTGTGAGTGAAAAGTGTGATGTTTATAGCTTCGGAGTAGTGGCACTTGAAACTTTAGTGGGAAGACATCCTAAGGAAATATTGTCATCAATTCAATCACCATTTGCTCAAGGCATCAAATTATGGGAAATATTAGACCAACGCCTTCCACTACCAAATATGTCAGTTTCACTTGGCATAGTTCGAGTTGCCGTAGTAGCATTTGCATGTTTAAATCCCAATCCTTGCTCTCGACCGACAATGAAATATGTATCTCAATGTTTTCATACTCAGATAACACCATTAAGCATTCCTTCACTTGAAATTTCATTGCAGCAGCTCATGAGTCAAGAACTCAAGTTTTATTTAGATTTGTAA 1194 0.3827 MDKGQLDYFARPSPIPKGISPYALIGNKEVCIDISYLQFQPCSSHSNTSNKVVHNLVIVLPILIFLILIFALLVCLKLRLVATKKKHENTVTTKNGDLFCIWNYDGNIAYEDIIRATEDFDMKYCIGTGAYGSVYKALLPGVEAEVETIDKSFRNEVRVLSEIKHRNIVKLYGFCLHKRIMFLIYQYMEKDDAEAMELDWKKRVDIVKGIAHALSYLHNDCNPPIVHRDIATTNILLNSEWQPSVADFGTSRLLKHDSSNQTIVAGTIGYIAPELAYTMVVSEKCDVYSFGVVALETLVGRHPKEILSSIQSPFAQGIKLWEILDQRLPLPNMSVSLGIVRVAVVAFACLNPNPCSRPTMKYVSQCFHTQITPLSIPSLEISLQQLMSQELKFYLDL. 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00652 397 PANTHER LEUCINE RICH REPEAT KINASE 2 18 370 - -
Seca2g00652 397 SMART tyrkin_6 120 367 IPR020635 GO:0004713|GO:0006468
Seca2g00652 397 SUPERFAMILY Protein kinase-like (PK-like) 106 365 IPR011009 -
Seca2g00652 397 Pfam Protein kinase domain 125 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00652 397 FunFam MDIS1-interacting receptor like kinase 2 184 373 - -
Seca2g00652 397 ProSitePatterns Tyrosine protein kinases specific active-site signature. 225 237 IPR008266 GO:0004672|GO:0006468
Seca2g00652 397 ProSiteProfiles Protein kinase domain profile. 120 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00652 397 Gene3D Phosphorylase Kinase; domain 1 80 185 - -
Seca2g00652 397 FunFam Leucine-rich repeat receptor protein kinase MSP1 82 187 - -
Seca2g00652 397 Gene3D Transferase(Phosphotransferase) domain 1 186 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00652 Seca-Chr2 9757363 9758858 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00652 13 273 Receptor kinase-like Gene Family AT4G08850 44.027 5.86e-73 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca2g00652 Pkinase 1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00652 - - gmx:100778268 525.398