Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00648 ATGATTCAATCTGCGTCTGCTGCACCATCGCAGCTTCAATTGGAAGCTAATGCTATACTCAACAGTCGATGGTGGGATTCTGACTTCAATATCTCAGATCGCTGTCTGTGGGGTGGTATAGCTTGCAACGACGCAGGAAGCATAACAGAAATCCACTATGGGAAATATTATAATCATTATAAAGAAGGGTTTCAATTTGCAAGACTCAACCTCTCTGCTTTCCACAACTTAGAAAAGCTTGTTGTCATTGGAACAGGACAAGGAGGGACCATCCCACCAGAAATAGGTACTCTCACCAAACTCACTTATCTTGATCTTTGCTACAATTCTTTTGAAGGTGAGATACCTCCTTCAATGGGAAATCTTAGCCTATTACAGAGCCTATACTTGTCTCATAACAGAATCAATGGGACATTGCCTATTTCACTAACGAGTCTCACCAGATTAAAAATGCTTGACATTTCCAACAATCTTCTACTTGGTCCCCTCCCTGATTTAGTTCAGCTAACCAACTTGCAAGTGTTGCGGCTAAATAACAACTCCATCAATGGGACCTTGCCCTTTTCACTTTCACATCTCACACAATTGGTAGAACTTGACATTTCAAAAAATCTGCTGGTTGGTTCCCTCCCTTATATGGATCAATTAATCCACTTCCTTATCAATATCAACCTCAGTTTCAACGTTTTCACCGGTGAAATACCACAACTACTTTATCTCCCAATGTTAAACAATTTGGATCTAAGCTACAATAATCTTTCTGGAACGATTCCACAATATCTCCTGCACATCAAATATGTGAACATTTCTTACAATTATCTGAAAGGTCCCATCCCAAATGGTATCAATCCTTATGCTCTAATAGGCAACAAGGAAGTATGCAGCAACATTTCGTATCTCCAATTCCAACCTTGTTCATCTCACAGCAAGAAAAGTAACAAAGTAGTGAACAAGCTAGTCATACTTCTTCCTATCCTCATTTTTCTAGTCTTGACCTTCGCACTACTTTTGTGTCTAAAGCTTCGTCTTGTTGCAACCAAGAAAAAACATCAAAACACAGTGACAACTAAGAATGGGGATTTGTTCTGCATATGGAACTATGATGGAAATATTGCATATGAAGACATCATTAGAGCAACTGAGGACTTTGACATGAAATACTGCATTGGAACAGGAGCATATGGGAGTGTTTACAAGGCACAATTACCTGGTGGTAAGGTTGTTGCCTTGAAGAAACTCCACAGATATGAAGCAGGGGTGGCGACTTTTGATAAGAGTTTTAGAAATGAAGTGAGGGTATTATCAAAAATAAAGCATCGACACATTGTGAAGCTTTATGGATTCTGCTTGCATAAACGAATCATGTTTTTGATCTATCAATACATGGAGAAAGGAAGCTTGTTCTCTGTCTTGTATGATGATGCAGAAGCAATGGAATTGGATTGGAAAAAGAGGGTTGACATTGTCAAAGGCATTGCACATGCTCTGTCATATCTTCATAATGATTGCAACCCTCCAATAGTGCATAGAGACATAGCTACCACCAATATCTTACTTAACTCTGAGTGTGAGCCAAGTGTTGCAGACTTTGGCACAGCCAGACTCCTCCAACATGATTCATCCAATCAAACTTTACCACCAATATGTAATTAA 1653 0.3926 MIQSASAAPSQLQLEANAILNSRWWDSDFNISDRCLWGGIACNDAGSITEIHYGKYYNHYKEGFQFARLNLSAFHNLEKLVVIGTGQGGTIPPEIGTLTKLTYLDLCYNSFEGEIPPSMGNLSLLQSLYLSHNRINGTLPISLTSLTRLKMLDISNNLLLGPLPDLVQLTNLQVLRLNNNSINGTLPFSLSHLTQLVELDISKNLLVGSLPYMDQLIHFLININLSFNVFTGEIPQLLYLPMLNNLDLSYNNLSGTIPQYLLHIKYVNISYNYLKGPIPNGINPYALIGNKEVCSNISYLQFQPCSSHSKKSNKVVNKLVILLPILIFLVLTFALLLCLKLRLVATKKKHQNTVTTKNGDLFCIWNYDGNIAYEDIIRATEDFDMKYCIGTGAYGSVYKAQLPGGKVVALKKLHRYEAGVATFDKSFRNEVRVLSKIKHRHIVKLYGFCLHKRIMFLIYQYMEKGSLFSVLYDDAEAMELDWKKRVDIVKGIAHALSYLHNDCNPPIVHRDIATTNILLNSECEPSVADFGTARLLQHDSSNQTLPPICN. 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00648 550 SMART tyrkin_6 383 550 IPR020635 GO:0004713|GO:0006468
Seca2g00648 550 Gene3D Ribonuclease Inhibitor 167 215 IPR032675 -
Seca2g00648 550 Gene3D Ribonuclease Inhibitor 216 297 IPR032675 -
Seca2g00648 550 PANTHER LEUCINE RICH REPEAT KINASE 2 60 165 - -
Seca2g00648 550 FunFam Nuclear pore complex protein NUP107 7 165 - -
Seca2g00648 550 FunFam Os07g0541700 protein 462 549 - -
Seca2g00648 550 Pfam Protein kinase domain 388 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00648 550 Gene3D Phosphorylase Kinase; domain 1 343 461 - -
Seca2g00648 550 Gene3D Transferase(Phosphotransferase) domain 1 462 548 - -
Seca2g00648 550 ProSitePatterns Protein kinases ATP-binding region signature. 389 411 IPR017441 GO:0005524
Seca2g00648 550 Gene3D Ribonuclease Inhibitor 9 166 IPR032675 -
Seca2g00648 550 SUPERFAMILY L domain-like 23 281 - -
Seca2g00648 550 ProSiteProfiles Protein kinase domain profile. 383 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00648 550 FunFam Leucine-rich repeat receptor protein kinase MSP1 345 461 - -
Seca2g00648 550 SUPERFAMILY Protein kinase-like (PK-like) 369 542 IPR011009 -
Seca2g00648 550 ProSitePatterns Tyrosine protein kinases specific active-site signature. 507 519 IPR008266 GO:0004672|GO:0006468
Seca2g00648 550 Pfam Leucine rich repeat 100 159 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00648 Seca-Chr2 9740031 9741749 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00648 100 542 Receptor kinase-like Gene Family AT4G08850 42.424 7.14e-109 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca2g00648 Pkinase 1e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00648 - - var:108327175 555.829