Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00646 ATGATTCAATCTGCGTCTGCTGCAGTACCATCACAGCTTCAATTGGATTTGGAAGCTAAAGCCATACTCAACAGTCAATGGTGGGATTCTTACTTCAATGTCTCAGATCGCTGTCAATGGGGTGGTATAGCTTGCAACAAAGCAGGAAGCATAACAGAAATCCACTATGGGAAATATATTAATAATTATAAAGAATGGATTCAATTTGCAACACTCAATCTCTCTGCTTTCCAGAATTTAGAAAAGCTTGTTGTCATTGGAATTGAACTACAAGGGACCATCCCACCAAAAATAGGTATTCTCACCAAACTCACTTATCTTGATTTATCCTACAATTCTCTTGAAGGTGAGATACCTCCTTCAATAGGAAATCTTATCCTATTACAGAGCCTATACATCTCTCACAACAACATTCAAGGCTCCATTCCTCATGAGTTGGATCTTTCTCATAACAGAATCACCGGTTCCCTCCCTTCTAATTTGGATCAGCTAACAAACTTGCAAAGGTTGTGGAATTTGAATCTAAGTTACAATCATCTCACCGGAATTGTTCCTCCATATTTTAGTTTTGTCAATAATTTGGACATTTCCCACAATTATTTGAACGGTCCCATTCCAAATGGTGTTCATCCTGAAGCTCTAATAGGCAATAAAGATATTTGTAGTGACAATCCTTTTAACCAAATCCAATTTCAATTCCAACCTTGTCCAACTCGCAACAAGAAAAGTAAAAAAGTAATGCACAATCTACCCATAATTCTTCCTATCCTCATTTTTCTAATCCTAGCCTTCTCACTACTCGTGTATCTAAAGTTTCATTGCATTGCAATTAAGAACAAACATACAAACACAACGACACCTAAGAATGGAGATTTATATTGCATTGGAACAGGGGCGTATGGGAGTGTTTACAAGGCACAATTACCTAATGCCAAGGTTGTTGTCTTAAAAAAATTCCATGGTTTTGAAGCAGAGGTGCAAACTTTTGATGAGAGTTTTAGAAATGAAGTGAGAGTGTTGTCAGGAATAAAGCATCGACATATTGTGAAGCTGTATGGATTCTGCTTGCATAGAAGAGTCATGTTTTTGATCTATCAATACATGGAGAAAATAAAAGCAATGGAGTTGGATTGGAGAAAGAGGGTTAACATTGTTAAAGGTGTTGCACATGCTCTCTCATATCTTCATAATGATTGCACCCCTCCGATAGTACATAGGGACATAGCTACCACCAATATCTTGCTTAACTCAGAGTGGCAACCCAGTGTTTCTGACTTTGGCATAGCTCGACTCCTCAAACTTGATTCATCCAATCGAACAGCAGTTGCGGGAACCATTGGATATATAGCTCCAGAGCTTGCCTATACAACTATTGTGAGTGAAAAGTGTGATGTTTATAGCTTTGGAGTAATGGCACTTGAAACTCTAGTGGGAAGGCATCCTAAGGAAATATTGTCATCACTTGAATTACCATCATCAAGTCAAGGCATCACATTAAGTGAAGTACTTGACCAACGCCTTCCCCTGCCAAATATGTCAGTGTTACATGACATAGTTTGTGTTGCCATATTATCATTTGCATGCTTAAATCCTAGTCCTTCCTCTCGACTAACAATGAAATATGTGTCTCAGTGTTTTCATACCCGCCAGCTACCACCATTAAGAATTCCTTTACATGAAATTTCATTGCAGCAACTCAAAATGCAGTCTTTTTTTGTTTCTAATTTCTATGCCTTTTATCTTCTTATTGTCTGTGGTGTGTTAATGATGGTGACTACAGAACCATCGCAGCTTCAATTGGAAGCTAATGCTATACTCACTAGTGAATGGTGGAACACGTCCCATTCTGACTTCAATATCTCCAATCGTTGTGAATGGGATACTATAGTTTGCAACAAGGCTGGAAGCATAACAGCAATCCAAATCGACTATAAGGATTATCCTGCAACCAAGGCAGAGTTTCAATTCACAACACTCAATCTCTCTGCTTTCCAGAATTTACAAAGCCTTGCTGTCAGGGGAAGACTACGAGGGACTATCCCAATTCAAATAGGTATTCTCACCAAACTTACACATCTTGACCTGTCACAAAATGCTCTTCAAGGTGAGATACCTCCTTTTATAGGAAATCTTAGCCTATTAGATTTTTTGAATATCGCTAACAACAAAATTCAAGGCTCCATTCCTGCTGAGTTAGGGTTCCTGAAAAATCTTACTATGTTAAATTTGTCTATTAACAAAATCAATGGAACTTTTCCTATTTCACTTACAAATCTCACCCAATTAAAAATTCTTGACATTTCCCACAATCAACTTGTAGGTTCGCTCCCTTCTAATTTAGGACAATTAAAAAACTTAAACCATTTGGATCTAAGCGACAATAATCTCAATGGTCCAATTCCCGATGGTATTGATCCTTATGTTCTAAATCTAATAGACAACAAGGATATATGCAGTGACAATAACTATACCCAATTCCAATTCCATTTCCATTTCCAACTTTGTTCACCTCATAGTAAGACAAGAAACAAAGTAACACACAAGCTAGTCATAGTTCTTCCTATCCTCATTTTTCTAATCCTAGCTTTCTTAGTCTATCTAAAGCTTCATCATCACATTGCAATTAAGAAGAATAAACATGCAAAGACGATGACTACTAAGAATGGGGATTTGTTCTACATATGGACCTATGATGGAAACATAGCATATGAAGACATCATCAGAGTAACAGAAGACTTTGACTTGAAATACTGCATTGGAACAGGAGCATATGGGAGTGTTTATAAGGCACAATTACCTAGTGGCAAGATTGTTGCCTTGAAGAAACTCCATGGTTTTGAAGCAGAGGTGCCGAGTTTTGATGAGAGTTTCATAAATGAAGTAAAGATATTATCAAAAATAAAGCATCGAAATATTGTGAAGCTTTATGGATTCTGCTTGCATAAAAGAATCATGTTTTTGATCTATCAGTACTTGGAGAAAGGAAGTTTGTTCTCTGTCTTGTATGATGATGAAGAAACAATGGAATTGGATTGGAAAAAGAGGGTTGACATTGTTAAAGGCATTGCACTTGCTCTGTCATATCTTCATAATGATTGCAACCCTCCAATAGTGCATAGAGACATAGCTACCACCAATATCTTACTTAACTCTGAGTGGCAGCCTAGTGTTGCTGACTTTGGCACTGCCAGACTCCTCCAACATGATTCATCCAATCAAACTATAGTTGCTGGAACCATTGGATATATAGCTCCAGGTAAATTATTTATTGCTTCCTTTTTTTTTCCTTTTTGTATACATGATTTGATGCAAAGCATACCTAATCCATACATTAGTTAA 3339 0.3723 MIQSASAAVPSQLQLDLEAKAILNSQWWDSYFNVSDRCQWGGIACNKAGSITEIHYGKYINNYKEWIQFATLNLSAFQNLEKLVVIGIELQGTIPPKIGILTKLTYLDLSYNSLEGEIPPSIGNLILLQSLYISHNNIQGSIPHELDLSHNRITGSLPSNLDQLTNLQRLWNLNLSYNHLTGIVPPYFSFVNNLDISHNYLNGPIPNGVHPEALIGNKDICSDNPFNQIQFQFQPCPTRNKKSKKVMHNLPIILPILIFLILAFSLLVYLKFHCIAIKNKHTNTTTPKNGDLYCIGTGAYGSVYKAQLPNAKVVVLKKFHGFEAEVQTFDESFRNEVRVLSGIKHRHIVKLYGFCLHRRVMFLIYQYMEKIKAMELDWRKRVNIVKGVAHALSYLHNDCTPPIVHRDIATTNILLNSEWQPSVSDFGIARLLKLDSSNRTAVAGTIGYIAPELAYTTIVSEKCDVYSFGVMALETLVGRHPKEILSSLELPSSSQGITLSEVLDQRLPLPNMSVLHDIVCVAILSFACLNPSPSSRLTMKYVSQCFHTRQLPPLRIPLHEISLQQLKMQSFFVSNFYAFYLLIVCGVLMMVTTEPSQLQLEANAILTSEWWNTSHSDFNISNRCEWDTIVCNKAGSITAIQIDYKDYPATKAEFQFTTLNLSAFQNLQSLAVRGRLRGTIPIQIGILTKLTHLDLSQNALQGEIPPFIGNLSLLDFLNIANNKIQGSIPAELGFLKNLTMLNLSINKINGTFPISLTNLTQLKILDISHNQLVGSLPSNLGQLKNLNHLDLSDNNLNGPIPDGIDPYVLNLIDNKDICSDNNYTQFQFHFHFQLCSPHSKTRNKVTHKLVIVLPILIFLILAFLVYLKLHHHIAIKKNKHAKTMTTKNGDLFYIWTYDGNIAYEDIIRVTEDFDLKYCIGTGAYGSVYKAQLPSGKIVALKKLHGFEAEVPSFDESFINEVKILSKIKHRNIVKLYGFCLHKRIMFLIYQYLEKGSLFSVLYDDEETMELDWKKRVDIVKGIALALSYLHNDCNPPIVHRDIATTNILLNSEWQPSVADFGTARLLQHDSSNQTIVAGTIGYIAPGKLFIASFFFPFCIHDLMQSIPNPYIS. 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00646 1112 SMART tyrkin_6 295 546 IPR020635 GO:0004713|GO:0006468
Seca2g00646 1112 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 358 550 - -
Seca2g00646 1112 SMART LRR_sd22_2 101 127 - -
Seca2g00646 1112 SMART LRR_sd22_2 783 806 - -
Seca2g00646 1112 SMART LRR_sd22_2 687 713 - -
Seca2g00646 1112 SMART LRR_sd22_2 759 782 - -
Seca2g00646 1112 SMART LRR_sd22_2 145 163 - -
Seca2g00646 1112 ProSitePatterns Protein kinases ATP-binding region signature. 919 941 IPR017441 GO:0005524
Seca2g00646 1112 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1037 1049 IPR008266 GO:0004672|GO:0006468
Seca2g00646 1112 PANTHER LEUCINE RICH REPEAT KINASE 2 76 550 - -
Seca2g00646 1112 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524
Seca2g00646 1112 SUPERFAMILY Protein kinase-like (PK-like) 894 1086 IPR011009 -
Seca2g00646 1112 ProSiteProfiles Protein kinase domain profile. 289 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00646 1112 ProSiteProfiles Protein kinase domain profile. 913 1112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00646 1112 FunFam Nuclear pore complex protein NUP107 4 147 - -
Seca2g00646 1112 SUPERFAMILY L domain-like 22 208 - -
Seca2g00646 1112 ProSitePatterns Tyrosine protein kinases specific active-site signature. 403 415 IPR008266 GO:0004672|GO:0006468
Seca2g00646 1112 FunFam Os07g0541700 protein 992 1079 - -
Seca2g00646 1112 SMART LRR_typ_2 759 783 IPR003591 -
Seca2g00646 1112 SMART LRR_typ_2 167 190 IPR003591 -
Seca2g00646 1112 SMART LRR_typ_2 101 125 IPR003591 -
Seca2g00646 1112 SMART LRR_typ_2 687 711 IPR003591 -
Seca2g00646 1112 FunFam Nuclear pore complex protein NUP107 596 748 - -
Seca2g00646 1112 Gene3D Phosphorylase Kinase; domain 1 873 991 - -
Seca2g00646 1112 Gene3D Phosphorylase Kinase; domain 1 268 365 - -
Seca2g00646 1112 Gene3D Transferase(Phosphotransferase) domain 1 366 551 - -
Seca2g00646 1112 Gene3D Transferase(Phosphotransferase) domain 1 992 1089 - -
Seca2g00646 1112 SUPERFAMILY L domain-like 661 807 - -
Seca2g00646 1112 Gene3D Ribonuclease Inhibitor 146 229 IPR032675 -
Seca2g00646 1112 Gene3D Ribonuclease Inhibitor 11 145 IPR032675 -
Seca2g00646 1112 PRINTS Leucine-rich repeat signature 104 117 - -
Seca2g00646 1112 PRINTS Leucine-rich repeat signature 759 772 - -
Seca2g00646 1112 FunFam Leucine-rich repeat protein kinase family protein 876 991 - -
Seca2g00646 1112 SUPERFAMILY Protein kinase-like (PK-like) 291 545 IPR011009 -
Seca2g00646 1112 Pfam Protein kinase domain 295 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00646 1112 Pfam Protein kinase domain 918 1085 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00646 1112 Pfam Leucine Rich Repeat 103 125 IPR001611 GO:0005515
Seca2g00646 1112 Pfam Leucine rich repeat 737 796 IPR001611 GO:0005515
Seca2g00646 1112 Gene3D Ribonuclease Inhibitor 594 872 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00646 Seca-Chr2 9707682 9719703 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00646 662 836 Receptor kinase-like Gene Family AT4G08850 30.000 3.20e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca2g00646 Pkinase 4.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00646 - - var:108327175 589.726