Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00643 ATGCAGTCTATTTCTGTTTCTAATTTCTATTATGCCTTTCTTCTTCTTCTTGTTATTATATGTGGTGATATGATGATGTTGATGATGATGGCCATGGGGAGTAGTCAATCTGCACCATCACAGCTTCAATTGGATTTGGAAGCTAAAGCCATACTCAACAGTCGATGGTGGAACACGTCCGATCCATACTACAATGTCTCCCTTCGCTGTGATCAGTGGTACGGTATAGCTTGCAACAAGGCAGGAAGCATAACAGAAATCAACTACTATTCTGAAGCAGCGGTTCAATTTGCAACACTCAACCTCTCTGCTTTCCAGAATTTAGAAAAGCTTATTGTCACTGAATGTGGATTACGAGGGACTATGCCACCAGAAATAGGTACTCTCACCAAACTCACTTATCTCGATTTGTCAAGCAATTCTCTTCAAGGTGAGATACCTCCTTCAATGGGAAATCTTAGCCTATTACAGACCCTATATATCTCTCATAACAACATTCAAGGCTCCATTCCTCATGAGTTGGGCTTCCTTAAAAATCTTACTTATTTAGATTTGTCAAGCAATTCTCTTGAAGGTGAGATACCTCCTTCAATGGGAAATCTTAGCCTATTAAAGCGTCTATACATCTCTAACAATAACATTCAAGGCTCCATTCCTCATGAGTTGGGTTTCCTTAAAAATCTTACTACATTATATTTGTCTCATAACAGAATCAGTGGGACCTTGCCCATTTCACTTACAAATCTCACCCAGTTACAAGAGCTTGACATTTCCAACAATCTTGTTGGTTGCCTCCCTTCTAACTTAGATCAATTATCCAACTTGCAGTTCTTGTGGCTAGATAACAACTCCATCAATGGGACTATCCCACCAGAAATTGGTACTCTCACAAAACTCACTTATCTCGATTTGTCCAGCAATTATCTTGAAGGTGAGATACCTCCTTCAATGGGAAATCTTAGCCTATTACAGAGCCTTCACATCTCTAACAACCACATTCAAGGCTCCATTCCTCATGAGTTAGACTTCCTCAAAAATCTTAATACATTAGATTTGTCAAGCAATTATTTTAAAGGTGAGATACCTCCTTCAATGGAAAATCTAAGCCTATTACAGAGCCTATACATCTCTAACAACAACATTCAAGGCTCCATTCCTCATGAGTTGGGCTTCCTCAAAAATCTTACTTCATTAGATCTGTCTCATAACAGAATCAGTGGGACCTTGCCCATTTCAATTACAAATCTCACCCAGTTAGAAAAGCTTGACGTTTCCAACAATTTTCTTGTTGGTTCCCTCCCTTCTAATTTAGATCAATTAATCAACTTGCAAGAATTGCGGCTGAATGAAAACTTCATCGGTGGGAACATAATAATACCCTTGTCAATTGAAAGCCTTGTCAATATCAACCTCAGTCACAACATTTTCACCGGTGAAATACCGCAACTACTTTATGTCCCAATGTTAAACAATTTGGATTTGGATATAAGCTACAATAAACTTTCTGGAATGATTCCCCGATATCTCCTGAACATCGGTTATGTGGACATGTCTTACAATAATCTGAAAGGTCCCATCCCATATGGTATCAGTCCTCATGCTCTAATAGGCAACAAGGAAATATGCAGCAACATTTCGTATTTCCAAATCCAATTCCAATTCCAACCTTGTTCATCTCACAGCAACACAAGTAACAAAGTAGTGCACAATCTAGTCATAGTTCTTCCTGTCCTCATTTTTCTAATCTTGTCCTTCACAATACTTGTGTGTCTAAAGTCTCGTCTTGTTGCCACCAAGAAAATACATGAAAACACAGTGACAGCTAAAAATGGGGATTTGTTCTGCATTTGGAACTATGATGGAAATATAGCATATGAAGACATCATTAGAGCAACTGAGGACTTTGACTTGAAATACTGCATTGGAACAGGAGCATATGGAAGTGTTTACAAGGCACAATTACCTGGTGGCAAGGTTGTTGCCTTGAAGAAACTCCACAGATTTGAAGCAGAGGTGGAAAGTTTTGATAAGAGTTTTAGAAATGAAGTGAGGGTATTATCAGAAATAAAGCATCGGCATATTGTGAAGCTTTATGGATTTTGCTTGCACAAAAGAATCATGTTTTTGATCTATCAGTACATGGAGAAAGGAAGCTTGTTCTCTGCCTTGTATGATGATACAGAAGCATTGGAATTGGATTGGAGAAAGAGGGTTGACATTGTTAAAGGCATTGCACATGCTCTGTCATATCTTCATAATGATTGCAACCCTCCAATAGTGCATAGAGACATAGCTACCACCAATATCTTACTTAACTCTGAGTGGCAGCCTAGTGTTGCAGACTTTGGTACAGCCAGACTCGTCAAACATGATTCATCCAATCAAACTATAGTCGCTGGAACCATTGGATATATAGCTCCAGAGCTTGCTTATACTATGGTTGTAAGTGAAAAGTGTGATGTTTATAGCTTTGGAGTAGTGGCACTTGAAACTTTAGTGGGAAGGCATCCAAAGGAAATATTAATGTCATCGGTTCAATCCTCAACATCTGCTAATGGTATCACATTATGTGAAATACTGGACCAACGACTCCCACTACCTAATAGGACTATTTTACTAGACATAGTTCATGTTGCTATAGTAGCATTTGCCTGTTTAAATCATAATCCTTTGTCTCGGCCAATAATGAAATGTGTTTCTCATTGTTTTCGTACTCACCCAACACCATTGAGCATTCCTTTACAGGAAATTTCATTGCTACAACTCATGAGTCAAGAACTCAAACATTATGTAAAACTTTGA 2802 0.3847 MQSISVSNFYYAFLLLLVIICGDMMMLMMMAMGSSQSAPSQLQLDLEAKAILNSRWWNTSDPYYNVSLRCDQWYGIACNKAGSITEINYYSEAAVQFATLNLSAFQNLEKLIVTECGLRGTMPPEIGTLTKLTYLDLSSNSLQGEIPPSMGNLSLLQTLYISHNNIQGSIPHELGFLKNLTYLDLSSNSLEGEIPPSMGNLSLLKRLYISNNNIQGSIPHELGFLKNLTTLYLSHNRISGTLPISLTNLTQLQELDISNNLVGCLPSNLDQLSNLQFLWLDNNSINGTIPPEIGTLTKLTYLDLSSNYLEGEIPPSMGNLSLLQSLHISNNHIQGSIPHELDFLKNLNTLDLSSNYFKGEIPPSMENLSLLQSLYISNNNIQGSIPHELGFLKNLTSLDLSHNRISGTLPISITNLTQLEKLDVSNNFLVGSLPSNLDQLINLQELRLNENFIGGNIIIPLSIESLVNINLSHNIFTGEIPQLLYVPMLNNLDLDISYNKLSGMIPRYLLNIGYVDMSYNNLKGPIPYGISPHALIGNKEICSNISYFQIQFQFQPCSSHSNTSNKVVHNLVIVLPVLIFLILSFTILVCLKSRLVATKKIHENTVTAKNGDLFCIWNYDGNIAYEDIIRATEDFDLKYCIGTGAYGSVYKAQLPGGKVVALKKLHRFEAEVESFDKSFRNEVRVLSEIKHRHIVKLYGFCLHKRIMFLIYQYMEKGSLFSALYDDTEALELDWRKRVDIVKGIAHALSYLHNDCNPPIVHRDIATTNILLNSEWQPSVADFGTARLVKHDSSNQTIVAGTIGYIAPELAYTMVVSEKCDVYSFGVVALETLVGRHPKEILMSSVQSSTSANGITLCEILDQRLPLPNRTILLDIVHVAIVAFACLNHNPLSRPIMKCVSHCFRTHPTPLSIPLQEISLLQLMSQELKHYVKL. 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00643 933 Pfam Leucine Rich Repeat 298 320 IPR001611 GO:0005515
Seca2g00643 933 SUPERFAMILY L domain-like 64 381 - -
Seca2g00643 933 Gene3D Ribonuclease Inhibitor 263 547 IPR032675 -
Seca2g00643 933 FunFam Leucine-rich repeat receptor protein kinase MSP1 594 713 - -
Seca2g00643 933 PRINTS Leucine-rich repeat signature 392 405 - -
Seca2g00643 933 PRINTS Leucine-rich repeat signature 132 145 - -
Seca2g00643 933 Pfam Leucine rich repeat 227 285 IPR001611 GO:0005515
Seca2g00643 933 Pfam Leucine rich repeat 131 190 IPR001611 GO:0005515
Seca2g00643 933 Pfam Leucine rich repeat 346 405 IPR001611 GO:0005515
Seca2g00643 933 SMART LRR_sd22_2 129 155 - -
Seca2g00643 933 SMART LRR_sd22_2 296 322 - -
Seca2g00643 933 SMART LRR_sd22_2 344 370 - -
Seca2g00643 933 SMART LRR_sd22_2 392 415 - -
Seca2g00643 933 SMART LRR_sd22_2 272 287 - -
Seca2g00643 933 SMART LRR_sd22_2 177 203 - -
Seca2g00643 933 SMART LRR_sd22_2 225 248 - -
Seca2g00643 933 SMART LRR_sd22_2 249 271 - -
Seca2g00643 933 SMART LRR_sd22_2 416 439 - -
Seca2g00643 933 SMART LRR_typ_2 392 415 IPR003591 -
Seca2g00643 933 SMART LRR_typ_2 177 201 IPR003591 -
Seca2g00643 933 SMART LRR_typ_2 296 320 IPR003591 -
Seca2g00643 933 SMART LRR_typ_2 129 153 IPR003591 -
Seca2g00643 933 SMART LRR_typ_2 344 368 IPR003591 -
Seca2g00643 933 SMART LRR_typ_2 225 248 IPR003591 -
Seca2g00643 933 SMART LRR_typ_2 249 271 IPR003591 -
Seca2g00643 933 SMART LRR_typ_2 416 440 IPR003591 -
Seca2g00643 933 SMART LRR_typ_2 272 294 IPR003591 -
Seca2g00643 933 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 243 335 - -
Seca2g00643 933 SUPERFAMILY RNI-like 264 595 - -
Seca2g00643 933 ProSitePatterns Tyrosine protein kinases specific active-site signature. 759 771 IPR008266 GO:0004672|GO:0006468
Seca2g00643 933 PANTHER LEUCINE RICH REPEAT KINASE 2 371 905 - -
Seca2g00643 933 ProSiteProfiles Protein kinase domain profile. 635 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00643 933 SUPERFAMILY Protein kinase-like (PK-like) 621 900 IPR011009 -
Seca2g00643 933 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 336 554 - -
Seca2g00643 933 ProSiteProfiles Leucine-rich repeat profile. 394 417 IPR001611 GO:0005515
Seca2g00643 933 FunFam MDIS1-interacting receptor like kinase 2 714 909 - -
Seca2g00643 933 Gene3D Transferase(Phosphotransferase) domain 1 714 908 - -
Seca2g00643 933 ProSiteProfiles Leucine-rich repeat profile. 227 250 IPR001611 GO:0005515
Seca2g00643 933 Pfam Protein kinase domain 640 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00643 933 Gene3D Phosphorylase Kinase; domain 1 595 713 - -
Seca2g00643 933 SMART tyrkin_6 635 903 IPR020635 GO:0004713|GO:0006468
Seca2g00643 933 ProSitePatterns Protein kinases ATP-binding region signature. 641 663 IPR017441 GO:0005524
Seca2g00643 933 FunFam Nuclear pore complex protein NUP107 37 195 - -
Seca2g00643 933 Gene3D Ribonuclease Inhibitor 172 262 IPR032675 -
Seca2g00643 933 Gene3D Ribonuclease Inhibitor 40 171 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00643 Seca-Chr2 9672717 9675927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00643 65 807 Receptor kinase-like Gene Family AT4G08850 36.395 6.90e-165 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca2g00643 Pkinase 3.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00643 - - gmx:102666098 991.875