Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00641 ATGAATAATAATATCACTATCATTCATAATACCATGGCCTTCCCACAACCTCAAAGTTTCATGTTTAACACCAATGAAGATCATCATGACCACCTCCCTTCAACCTCTCTCAATACCTTCCCCTCTTTCCCACCCCAACACTTTCAAGGTTGTGTTATTGTAGGGGGTGTACCTTTTTTGTTGAAGCGGTCCATGTCATTTTCAGGCATAGAGAACAAGTGTGATGAAGTGCATGGAGATGATGAGTTATCTGATGATGGATTCCAAAGTGGGGAGAAGAAAAAGAGGCTGAATTTGGAACAGGTGAGGGCCCTTGAGAAGAGCTTTGAGTTGGGGAACAAGCTTGAGCCAGAAAGGAAAGTGCAATTGGCTAAGGCTCTGGGGTTGCAGCCAAGACAGATTGCTATATGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAACTGGAGAAGGAATATGAAGTCCTCAAAAAGCAATTTGAAGCTGTCAAGACTGACAACAATGTCCTTAAGGCTCAGAACCAGAAACTACATGCAGAGTTACAAGCTCTAAAAAGTAGGGATTGGTGTGAAGCTGGAACAATCAGCCTTAAGAAAGAAACTGAGGGTTCTTGGAGCAATAATGGAAGTGATAACAGCTCAGACATCAATTTAGATCTCTCAAGAACACCAGTTTTAAACAGTCCTGTATCTTCTCAGAACTGTAAAAGCCTTCTACCCACTTCATTAAAACCCACCAGCATAACACAGCTCCTTCAATACTCATCAAGACCAGATCTTCAAGATGAAGGCTTCTGCAACATGCTTCACAACATTGATCAGCAGCAGAACTTTTGGCCCTGGCCTGAGCAGCACCATTTCCATTGA 870 0.4276 MNNNITIIHNTMAFPQPQSFMFNTNEDHHDHLPSTSLNTFPSFPPQHFQGCVIVGGVPFLLKRSMSFSGIENKCDEVHGDDELSDDGFQSGEKKKRLNLEQVRALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKTDNNVLKAQNQKLHAELQALKSRDWCEAGTISLKKETEGSWSNNGSDNSSDINLDLSRTPVLNSPVSSQNCKSLLPTSLKPTSITQLLQYSSRPDLQDEGFCNMLHNIDQQQNFWPWPEQHHFH. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00641 289 ProSitePatterns 'Homeobox' domain signature. 123 146 IPR017970 GO:0000981|GO:0006355
Seca2g00641 289 FunFam Homeobox-leucine zipper protein ATHB-13 85 152 - -
Seca2g00641 289 Pfam Homeodomain 93 146 IPR001356 GO:0003677
Seca2g00641 289 Gene3D - 86 157 - -
Seca2g00641 289 ProSiteProfiles 'Homeobox' domain profile. 88 148 IPR001356 GO:0003677
Seca2g00641 289 Coils Coil 140 188 - -
Seca2g00641 289 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 79 261 IPR045224 GO:0003700
Seca2g00641 289 SMART HOX_1 91 152 IPR001356 GO:0003677
Seca2g00641 289 SUPERFAMILY Homeodomain-like 84 150 IPR009057 -
Seca2g00641 289 CDD homeodomain 93 149 IPR001356 GO:0003677
Seca2g00641 289 Pfam Homeobox associated leucine zipper 148 187 IPR003106 GO:0006355|GO:0043565
Seca2g00641 289 PRINTS Lambda-repressor HTH signature 128 144 IPR000047 GO:0003677
Seca2g00641 289 PRINTS Lambda-repressor HTH signature 119 128 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00641 Seca-Chr2 9660284 9662263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00641 12 284 Homeobox Transcription Factor Family AT5G15150 50.662 3.73e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca2g00641 Homeodomain 3.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00641 K09338 - gmx:100790803 401.749