Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00629 ATGGGAAGACCACCTTGTTGTGACAAAGAAGGTGTCAAGAAAGGACCTTGGACTCCTGAAGAAGATATCATTCTGGTCACTTATGTACAGGAACATGGTCCTGGCAATTGGAGGGCTGTTCCCACCAAGACAGTATTTTGTGGTTTTTCAGGGTTGTCAAGATGCAGTAAGAGTTGCAGACTTAGATGGACAAATTACCTAAGGCCAGGAATCAAAAGAGGCAACTTTACAGAACAAGAGGAGAAGATGATAATCCATCTTCAAGATCTTTTAGGAAACAGATGGGCTGCTATAGCTTCATACCTTCCACAGAGAACAGATAATGACATAAAAAATTATTGGAACACCCATTTGAAAAAGAAGCTCAAGAAATTGCAAACAGGTTCTGAAGGGAGTTTGGGAGATGGGTTTTCAGCATCACAGAGGATTCCTAGAGGTCAATGGGAAAGAAGGCTCCAAACAGATATCCAAATGGCTAAAAAAGCTCTTAGTGAAGCCCTTTCACCAGAGAAACAATCTTCTTTATCTGCATCAAACCCTTCCAACAGTACTACCTCCTCTTCCACTAAACCAACACAATCTTTGTGCTATGCTTCAAGTGCTGATAACATAGCTCGTTTGCTGAAAGGTTGGATGAAAAATCCACCAAAGTCCTCTCGGACTAACTCAGCTATGACCCAAAATTCCTTCAACAATTTGGCTGCTGCAGGGACTGACACTGCTTCTAGTGAAGTAAGCCTAAATGGAGCAAAAGGAAACAGTGCTGAATTGTCTGAGACATTTGTATCCTTGTTTGGTTTTGAGTCTTTGGAGTCTTCAAATTCTGAGTTTTCTCAGTCTTTGTCCCCTGAGGCTACTGTTTTACAAGATGAAAGCAAGCCTGATATTGGTGCAGAAATAATGCCCTTTTCTTTGCTTGAAAAATGGCTTCTTGATGAGGCTGGTTGTCCAGAGAAAGTAGGCATAAGTGATGCTCAGATTTTTTAG 987 0.4134 MGRPPCCDKEGVKKGPWTPEEDIILVTYVQEHGPGNWRAVPTKTVFCGFSGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSEGSLGDGFSASQRIPRGQWERRLQTDIQMAKKALSEALSPEKQSSLSASNPSNSTTSSSTKPTQSLCYASSADNIARLLKGWMKNPPKSSRTNSAMTQNSFNNLAAAGTDTASSEVSLNGAKGNSAELSETFVSLFGFESLESSNSEFSQSLSPEATVLQDESKPDIGAEIMPFSLLEKWLLDEAGCPEKVGISDAQIF. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00629 328 ProSiteProfiles Myb-like domain profile. 9 67 IPR001005 -
Seca2g00629 328 MobiDBLite consensus disorder prediction 167 194 - -
Seca2g00629 328 CDD SANT 75 117 IPR001005 -
Seca2g00629 328 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Seca2g00629 328 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 238 - -
Seca2g00629 328 Gene3D - 13 72 - -
Seca2g00629 328 MobiDBLite consensus disorder prediction 125 146 - -
Seca2g00629 328 CDD SANT 16 67 IPR001005 -
Seca2g00629 328 SMART sant 13 69 IPR001005 -
Seca2g00629 328 SMART sant 72 120 IPR001005 -
Seca2g00629 328 Pfam Myb-like DNA-binding domain 73 118 IPR001005 -
Seca2g00629 328 Pfam Myb-like DNA-binding domain 14 67 IPR001005 -
Seca2g00629 328 SUPERFAMILY Homeodomain-like 11 114 IPR009057 -
Seca2g00629 328 FunFam MYB-related transcription factor 13 72 - -
Seca2g00629 328 Gene3D - 74 134 - -
Seca2g00629 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 67 IPR017930 -
Seca2g00629 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Seca2g00629 328 FunFam Transcription factor MYB30 74 132 - -
Seca2g00629 328 MobiDBLite consensus disorder prediction 163 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00629 Seca-Chr2 9417082 9418458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00629 1 325 MYB Transcription Factor Family AT5G62470 50.811 4.98e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca2g00629 Myb_DNA-binding 5.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00629 K09422 - gmx:778080 466.077