Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00627 ATGGATATAACCCCAACAACAATGATCAACACCAACACCACTACTCCAACCAGTGCAACAACAACACCAACAACAAAATCACCAGAACATGACACTGAAACACCGACCCGGATCAACACAACAACAAAGCCCTTATCTTTTTCAAACGGGGTTCTCAAACGCCACACTCACTCTCACTCCCACCACCACCACCACCACCCTATAGCCACCACAAACCACCACCACCCCATGGCGGTTATTTACAAAGAATGCCTCAAAAACCACGCCGCCAACTTAGGTGGCCACGCCTTAGACGGTTGCGGCGAGTTCATGCCGTCCCCCACCGCCACCGCCGCCGACCCAAGTTCCATAAAATGCGCCGCCTGTGGCTGCCACCGGAATTTCCACCGCCGTGAGCCAGAAGAGCCACCAATCACCACCGCCACACATGTAATAGAGTACCAACCTCACCACCGCCACCACCCTCCTCCTCCGCCGTTTCAGCCGTCGAACCGGAGCCCCAATTCAGCTTCTCCGCCGCCGATCTCCTCGTCTTACTACCCGTCCGCCCCTCACATGCTGCTGGCTCTCTCCGCCGGACTGGCGGCGCCGCCGGAAAACACGGCTGGCCCCACCATTATTCACAACAACAACAGCGCGACGAGGAAACGGTTCAGGACAAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCAAAGGTTCGCAGAGAAAGTTGGGTGGAAGATGCAGAAGAGGGATGAGGATTTGGTGCAAGAGTTTTGCAACGAGATTGGTGTTGATAGAGGTGTGCTTAAGGTTTGGATGCATAACAACAAGAACACTTTTGTCAAAAAAGATAGTAATAATAATAATAGTAATGAGAACAATGACGATAACAATGCTAATGCTAATATTGCTGGTGGTGCTGGAAATAAGAGCTTTTTGCCTCTTGAAGATGACCCCATCAACCATAACAACAACAATGCTGATATCAATGGCAACGATGGTGCTGAGGATCCAAGTCATAATCACTACCACCAGAATGAAGCAACTGTTCGTGCTAATGGGTCATCTTCTTCTTCTTGA 1062 0.5066 MDITPTTMINTNTTTPTSATTTPTTKSPEHDTETPTRINTTTKPLSFSNGVLKRHTHSHSHHHHHHPIATTNHHHPMAVIYKECLKNHAANLGGHALDGCGEFMPSPTATAADPSSIKCAACGCHRNFHRREPEEPPITTATHVIEYQPHHRHHPPPPPFQPSNRSPNSASPPPISSSYYPSAPHMLLALSAGLAAPPENTAGPTIIHNNNSATRKRFRTKFSQEQKEKMQRFAEKVGWKMQKRDEDLVQEFCNEIGVDRGVLKVWMHNNKNTFVKKDSNNNNSNENNDDNNANANIAGGAGNKSFLPLEDDPINHNNNNADINGNDGAEDPSHNHYHQNEATVRANGSSSSS. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00627 353 MobiDBLite consensus disorder prediction 339 353 - -
Seca2g00627 353 SUPERFAMILY Homeodomain-like 209 274 IPR009057 -
Seca2g00627 353 Gene3D - 207 275 - -
Seca2g00627 353 NCBIfam homeobox domain, ZF-HD class 215 272 IPR006455 -
Seca2g00627 353 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 81 132 IPR006456 -
Seca2g00627 353 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 56 273 - -
Seca2g00627 353 MobiDBLite consensus disorder prediction 312 326 - -
Seca2g00627 353 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 81 132 IPR006456 -
Seca2g00627 353 MobiDBLite consensus disorder prediction 274 353 - -
Seca2g00627 353 MobiDBLite consensus disorder prediction 274 299 - -
Seca2g00627 353 MobiDBLite consensus disorder prediction 154 169 - -
Seca2g00627 353 Pfam ZF-HD protein dimerisation region 79 133 IPR006456 -
Seca2g00627 353 MobiDBLite consensus disorder prediction 149 178 - -
Seca2g00627 353 MobiDBLite consensus disorder prediction 1 45 - -
Seca2g00627 353 FunFam Zinc-finger homeodomain protein 2 205 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00627 Seca-Chr2 9282760 9283842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00627 77 275 ZF-HD Transcription Factor Family AT1G69600 55.924 1.38e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca2g00627 ZF-HD_dimer 2.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00627 - - gmx:100789447 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00627 2 9282760 9283842 Seca2g00627 2 9282760 9283842 ECH