LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g00616	ATGGAAGGGACAGGTCCAAAAACATTCAGCTTCGACACTGAGCCGCAAAATCCCAGATCAACCATAAAGCAACTTTCTTTTGCAAATCTTGCTGAGAATTACCCACCTGGCTTTCCCAAAAAGGTATTTGCAGAGATCATAGGCACCTTCCTATTGGTTTTTGTGGGAAGTGGTTCTGCTGGCCTTAGTGCTATTGATGAAAACAAAGTCTCAAAATTGGCAGCTTCACTTGCAGGGGGATTCATAGTGACAGTGATGATTTATGCAATTGGACACATCTCTGGGGCACACATGAATCCAGCAGTCTCCTTAGCTTTTGCCACCGTCAGCCATTTTCCTTGGAAACAGGTTCCATTTTATATTGCAGCTCAACTAACAGGAGCAATTTCTGCTTCATATACGCTACGACTGCTATTAGAGCCATCAAAGCAGATTGGGGCAACATCACCTTCTGGATCAAACATTCAAGCACTAATTATGGAAATTGTGTCAACATTCACTATGGTTTTCATTGCCACCGCCGTTTCCACCGACACAAAAGCTGTAAAATTAATGCTATAA	561	0.426	MEGTGPKTFSFDTEPQNPRSTIKQLSFANLAENYPPGFPKKVFAEIIGTFLLVFVGSGSAGLSAIDENKVSKLAASLAGGFIVTVMIYAIGHISGAHMNPAVSLAFATVSHFPWKQVPFYIAAQLTGAISASYTLRLLLEPSKQIGATSPSGSNIQALIMEIVSTFTMVFIATAVSTDTKAVKLML.	187

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g00616	186	Gene3D	Glycerol uptake facilitator protein.	9	185	IPR023271	-
	Seca2g00616	186	PRINTS	Major intrinsic protein family signature	116	135	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca2g00616	186	PRINTS	Major intrinsic protein family signature	79	103	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca2g00616	186	PRINTS	Major intrinsic protein family signature	40	59	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca2g00616	186	PRINTS	Major intrinsic protein family signature	160	178	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca2g00616	186	Pfam	Major intrinsic protein	38	183	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Seca2g00616	186	ProSitePatterns	MIP family signature.	97	105	IPR022357	-
	Seca2g00616	186	PANTHER	AQUAPORIN NIP2-1	24	183	IPR034294	-
	Seca2g00616	186	SUPERFAMILY	Aquaporin-like	34	181	IPR023271	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g00616	Seca-Chr2	8814230	8818364	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g00616	14	182	Major Intrinsic Protein MIP	AT4G19030	39.548	3.08e-38	129

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g00616	K09874		-	gmx:100788071	247.284