Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00605 ATGCAGTCTTTTTTTGTTTCTAATTTCTATCATGCCTTTCTTCTTCTTCTTCTTGTTATTATATGTGGTGATATGATGATGTTGATGATGATGGCCATGGGGAGTAGTCAATCTGCACCATCACAGCTTCAATTGGATTTGGAAGCTAATGCTTTACTCAACAGTCGATGGTGGAACACGTCCGATCCATACTACAATGTTTCCCGTCGCTGCGAGTGGGAACATACAATAGTTTGCAACAAGGCTGGAAGCATAACAGAAATCCATTATGGGGAATATTATTATCATCCAGTCAGGCTTCAATTTGCAACACTCAATCTCTCTACTTTCAAGAATTTAGAAAAGCTTGTTGTCAATGTTAGTGGACTACAAGGGACCATTCCATCAGAAATAGGTACTCTCACCAAACTCATTCATCTCGATTTGTCCTACAATTCTCTTGAAGGTGAGATACCTCCTTCAATGGGAAATCTTAGTCTATTACAGAGCCTTCACATCTCTTTCAACAACATTCAAGGCTCCATTCCTCATGAGTTGGGCTTCCTAAAAAGTCTTACTTCATTAGATTTGTCCTACAATTCTCTTGAAGGGGAGATACCCCCTTCAATAGGAAATCTTAGCCTATTACAAAGCCTTGGCATCTCTCAAAACAACATTCAAGGTTCCATTCCTCATGAGTTGAGCTTCCTCAAAAATCTTACTTCATTAGATTTGTCCTACAACTCTCTTGAAGGGGAGATACTCCCTTCAATAGGAAATCTTAGCCTATTACAAAACCTTGACATCTCTCAAAACAACATTCAAGGTTCCATTCCTCATGAGTTGAGCTTCCTAAAAAATCTTACTTCATTAGATTTGTCCTACAATTCTCTTGAAGGTGAGATACCTCCTTCAATAGGAAATATTAGCCTATTACAGAGCATATACATCTCTAACAACAACATTCAAGGCTCCATTCCTCATGAGTTGAGCTTCCTAAAAAATCTTACTTCATTAGATTTGTCCTACAATTCTCTTGAAGGTGAGATACCTCCTTCAATAGGAAATATTAGCCTATTACAGAGCATATACATCTCTAACAACAACATTCAAGGCTCCATTCCTCATGAGTTGAGCTTCCTAAAAAATCTTACTTCATTAGATTTGTCCTACAATTCTCTTGAAGGTGAGATACCTCCTTCAATAGGAAATATTAGCCTATTACAGAGCATATACATCTCTAACAACAACATTCAAGGCTCCATTCCTCATGAGTTGAGCTTCCTAAAAAATCTTACTTCATTAGATTTGTCCTACAATTCTCTTGAAGGTGAGATACCTCCTTCAATAGGAAATATTAGCCTATTACAGAGCATATACATCTCTAACAACAACATTCAAGGCTCCATTTCTCATGAGTTGGGCTTCCTCAAAAATCTTATTTCATTAAATTTGTCTAACAACCACATTCAAGACTCAATTCCTCATGAGTTGGGCTTCCTCAAAAATCTTACTTCATTAGATCTGTCTCACAACAGAATCAGTGGGACCCTGCCTATTTCACTTGCAAGTCTTACCCACTTAGAAGAGCTTGACATTTCCAACAATTTTCTTGTTGGTTCCCTCCCTTCTAACTTAGATCAATTATCCAACTTGCAAGAGTTATGGCTAGGTAACAACTCAATCAATGGGACCTTGCCTATTTCACTTACAAGTCTCACCAGATTAGAAAAGCTTGACATTTCCCACAATCAACTAGTTGGTCCCCTCCCTAATTTAGTTCAACTAATCAACTTGCAAGAGTTGCGACTAAATGAAAACTCCATCAGTGGGAACATATTAATACCCTCGTCAATTCAAAGCCTTATCAATATCAACCTCAGTCACAACGTTTTCACCGGTGAAATACCACAACTACTTTATCTCCCATTGTTAAACAATTTGGATCTAAGCTACAATAATCTTTCTGGAATGATTCCCCAATATCTCCTGCAAGTCAATTATGTGAACATTTCTTACAATTATCTAAAAGGTCCCATCCCAAACGGTATCAATCCTTATGCTCTAATAGGCAACAAGGAAGTATGCAGCGACATTTTGTATCTCCAATTCCAACCTTGTTCATCTCATATCAAGAAAAGTAACAAAGTAGTGCACAAGACAAGTGACAAAGTAGTGCACAGTCTAGTCATAGTTCTTCCTATCCTCATTTTTCTAATCTTGACCTTCGCACTACTTGTGTGTCTAAAGCTTCGTCTTGTTGCAACCAAGAAAAAACATGAAAAGACGGTGACAGCTAAGAATGGGGATTTGTTCTGCATTTGGGACTATGATGGAAATATAGCATATGAAGACATCATCAGAGCAACTGAGGACTTTGACATGAAATACTGCATTGGAACAGGAGCATATGGCAGTGTTTACAAGGCACAATTACCTGGTGGTAAGGTTGTTGCCTTGAAGAAACTCCACAGATTTGAAGCAGAGGTGGTGACTTTTGATAAGAGTTTTAGAAATGAAGTGAGGGTATTATCAGAAATAAAGCATCGACATATTGTGAAACTTTATGGATTCTGCTTGCATAAAAGAATCATGTTTTTAATCTATCAATACATGGAGAAAGGAAGCTTGTTCTCTGTCTTGTATGATGATACAGAAGCAATGGAATTGGATTGGATAAAGAGGGTTGACATTGTTAAAGGCATTACACATGCTCTGTCATATCTTCATAATGATTGCAACCCTCCAATAGTGCATAGAGACATAGCTACCACCAATATCTTGCTTAACTCTGAGTGGCAGCCTAGTGTTGCGGACTTTGGCACAGCCAGACTCCTCAAACATGATTCATCTAATCAAACTATAGCCGCTGGAACCATTGGGTATATAGCTCCAGAGCTTGCCTATACAATGGTTGTGAGTGAAAAGTGTGATGTCTACAGCTTCGGAGTAGTGGCACTTGAAACTTTAGTGGGAAGGCATCCTAAGGAAATATTGTCATCAATTCAATCACCATCTGCTCAAGGCATCAAATTATGGGAAATATTAGACCAACGCCTTCCACTACCAAATATGTCAGTTTCATTTGACATAGTTCGGGTTGCCATAGTAGCATTTGCATGTTTAAATCTCAATCCTTGCTCTCGACCGACAATGAAATATGTGTCTCATTGTTTTCATACTCCGATAACATCATCAAGCATTCCTTCACTTGAAATTTCATTGCAACAGCTCATGAGTCAAGAACTCAAGTTTTATTTAGATTTGTAA 3249 0.3807 MQSFFVSNFYHAFLLLLLVIICGDMMMLMMMAMGSSQSAPSQLQLDLEANALLNSRWWNTSDPYYNVSRRCEWEHTIVCNKAGSITEIHYGEYYYHPVRLQFATLNLSTFKNLEKLVVNVSGLQGTIPSEIGTLTKLIHLDLSYNSLEGEIPPSMGNLSLLQSLHISFNNIQGSIPHELGFLKSLTSLDLSYNSLEGEIPPSIGNLSLLQSLGISQNNIQGSIPHELSFLKNLTSLDLSYNSLEGEILPSIGNLSLLQNLDISQNNIQGSIPHELSFLKNLTSLDLSYNSLEGEIPPSIGNISLLQSIYISNNNIQGSIPHELSFLKNLTSLDLSYNSLEGEIPPSIGNISLLQSIYISNNNIQGSIPHELSFLKNLTSLDLSYNSLEGEIPPSIGNISLLQSIYISNNNIQGSIPHELSFLKNLTSLDLSYNSLEGEIPPSIGNISLLQSIYISNNNIQGSISHELGFLKNLISLNLSNNHIQDSIPHELGFLKNLTSLDLSHNRISGTLPISLASLTHLEELDISNNFLVGSLPSNLDQLSNLQELWLGNNSINGTLPISLTSLTRLEKLDISHNQLVGPLPNLVQLINLQELRLNENSISGNILIPSSIQSLININLSHNVFTGEIPQLLYLPLLNNLDLSYNNLSGMIPQYLLQVNYVNISYNYLKGPIPNGINPYALIGNKEVCSDILYLQFQPCSSHIKKSNKVVHKTSDKVVHSLVIVLPILIFLILTFALLVCLKLRLVATKKKHEKTVTAKNGDLFCIWDYDGNIAYEDIIRATEDFDMKYCIGTGAYGSVYKAQLPGGKVVALKKLHRFEAEVVTFDKSFRNEVRVLSEIKHRHIVKLYGFCLHKRIMFLIYQYMEKGSLFSVLYDDTEAMELDWIKRVDIVKGITHALSYLHNDCNPPIVHRDIATTNILLNSEWQPSVADFGTARLLKHDSSNQTIAAGTIGYIAPELAYTMVVSEKCDVYSFGVVALETLVGRHPKEILSSIQSPSAQGIKLWEILDQRLPLPNMSVSFDIVRVAIVAFACLNLNPCSRPTMKYVSHCFHTPITSSSIPSLEISLQQLMSQELKFYLDL. 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00605 1082 SMART LRR_sd22_2 278 304 - -
Seca2g00605 1082 SMART LRR_sd22_2 518 541 - -
Seca2g00605 1082 SMART LRR_sd22_2 422 448 - -
Seca2g00605 1082 SMART LRR_sd22_2 566 594 - -
Seca2g00605 1082 SMART LRR_sd22_2 230 256 - -
Seca2g00605 1082 SMART LRR_sd22_2 374 400 - -
Seca2g00605 1082 SMART LRR_sd22_2 134 160 - -
Seca2g00605 1082 SMART LRR_sd22_2 326 352 - -
Seca2g00605 1082 SMART LRR_sd22_2 182 208 - -
Seca2g00605 1082 SMART LRR_sd22_2 494 515 - -
Seca2g00605 1082 SMART LRR_sd22_2 542 565 - -
Seca2g00605 1082 SUPERFAMILY RNI-like 342 679 - -
Seca2g00605 1082 Gene3D Ribonuclease Inhibitor 198 293 IPR032675 -
Seca2g00605 1082 Gene3D Ribonuclease Inhibitor 390 488 IPR032675 -
Seca2g00605 1082 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 103 322 - -
Seca2g00605 1082 Gene3D Transferase(Phosphotransferase) domain 1 865 1060 - -
Seca2g00605 1082 ProSiteProfiles Leucine-rich repeat profile. 496 519 IPR001611 GO:0005515
Seca2g00605 1082 SUPERFAMILY Protein kinase-like (PK-like) 772 1049 IPR011009 -
Seca2g00605 1082 SMART LRR_typ_2 518 541 IPR003591 -
Seca2g00605 1082 SMART LRR_typ_2 470 492 IPR003591 -
Seca2g00605 1082 SMART LRR_typ_2 278 302 IPR003591 -
Seca2g00605 1082 SMART LRR_typ_2 635 659 IPR003591 -
Seca2g00605 1082 SMART LRR_typ_2 566 589 IPR003591 -
Seca2g00605 1082 SMART LRR_typ_2 182 206 IPR003591 -
Seca2g00605 1082 SMART LRR_typ_2 374 398 IPR003591 -
Seca2g00605 1082 SMART LRR_typ_2 494 517 IPR003591 -
Seca2g00605 1082 SMART LRR_typ_2 326 350 IPR003591 -
Seca2g00605 1082 SMART LRR_typ_2 134 158 IPR003591 -
Seca2g00605 1082 SMART LRR_typ_2 542 565 IPR003591 -
Seca2g00605 1082 SMART LRR_typ_2 422 446 IPR003591 -
Seca2g00605 1082 SMART LRR_typ_2 230 254 IPR003591 -
Seca2g00605 1082 Pfam Protein kinase domain 791 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00605 1082 Pfam Leucine Rich Repeat 328 349 IPR001611 GO:0005515
Seca2g00605 1082 Pfam Leucine Rich Repeat 424 445 IPR001611 GO:0005515
Seca2g00605 1082 Pfam Leucine Rich Repeat 280 301 IPR001611 GO:0005515
Seca2g00605 1082 Pfam Leucine Rich Repeat 376 397 IPR001611 GO:0005515
Seca2g00605 1082 Pfam Leucine Rich Repeat 136 158 IPR001611 GO:0005515
Seca2g00605 1082 PANTHER LEUCINE RICH REPEAT KINASE 2 347 1056 - -
Seca2g00605 1082 Gene3D Phosphorylase Kinase; domain 1 746 864 - -
Seca2g00605 1082 SMART tyrkin_6 786 1052 IPR020635 GO:0004713|GO:0006468
Seca2g00605 1082 FunFam Leucine-rich repeat receptor protein kinase EMS1 323 418 - -
Seca2g00605 1082 ProSitePatterns Tyrosine protein kinases specific active-site signature. 910 922 IPR008266 GO:0004672|GO:0006468
Seca2g00605 1082 FunFam MDIS1-interacting receptor like kinase 2 865 1058 - -
Seca2g00605 1082 SUPERFAMILY L domain-like 67 411 - -
Seca2g00605 1082 ProSiteProfiles Protein kinase domain profile. 786 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00605 1082 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 748 864 - -
Seca2g00605 1082 Pfam Leucine rich repeat 449 507 IPR001611 GO:0005515
Seca2g00605 1082 Pfam Leucine rich repeat 520 579 IPR001611 GO:0005515
Seca2g00605 1082 Pfam Leucine rich repeat 184 243 IPR001611 GO:0005515
Seca2g00605 1082 ProSitePatterns Protein kinases ATP-binding region signature. 792 814 IPR017441 GO:0005524
Seca2g00605 1082 ProSiteProfiles Leucine-rich repeat profile. 472 495 IPR001611 GO:0005515
Seca2g00605 1082 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 419 703 - -
Seca2g00605 1082 PRINTS Leucine-rich repeat signature 566 579 - -
Seca2g00605 1082 PRINTS Leucine-rich repeat signature 497 510 - -
Seca2g00605 1082 Gene3D Ribonuclease Inhibitor 489 586 IPR032675 -
Seca2g00605 1082 Gene3D Ribonuclease Inhibitor 294 389 IPR032675 -
Seca2g00605 1082 Gene3D Ribonuclease Inhibitor 587 698 IPR032675 -
Seca2g00605 1082 Gene3D Ribonuclease Inhibitor 41 197 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00605 Seca-Chr2 8579021 8582512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00605 48 958 Receptor kinase-like Gene Family AT4G08850 37.420 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca2g00605 Pkinase 3.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00605 - - gsj:114396585 1073.92