Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00599 ATGCGGTCTTTTTCTGTCCTTAATTTCTACGGCCCAGAAATATGGATTGTCTTTCTTCTTCTTCTTATTTGTGGTGTGATGATTCAATCTGCGTCTGCTGCACCATCGCAACTTCAATTGGAAGCTAATGCTATACTCAGCAGTCGATGGTGGGATTCTGACTTCAATATCTCAGATCGCTGTGAGTGGTATGGTATAGCTTGCAACAAAGCAGGAAGCATAACAGAAATCAACTATGGCTGTAATAAAGTAGGGGTTCAATTGGCAGCACTCAACCTCTCTGCTTTCCAGAATTTAGAAAAGCTTATCGTCACTAAATGTGGATTACGAGGGACTATCCCACCAGAAACAGGTACTCTCACCAAACTCACTTATCTCGATTTGTCCAGCAATTCTCTTGAAGGTGAGATACCCCCTTCAATAGGAAATCTTAGCCTATTACAGAGCCTAGACTTTTCTAACAACGACATTCAAGGCTCCATTCCTCATGAGTTGGGTTTCCTCAAAAATCTTACTTTATTAAGTCTACCTCATAATAGAATCAATGGGATCTTGCCTATTTCACTTACAAATCTCACCCGATTAGAAAAGCTTGGCATTTCCAACAATCTTCTTGTTGGTTCTCTCCCTTCTAACTTAGATGAATTAACCAACTTGCATGTCTTGCGGCTAAATAACAACTTCATCAATGGAACCTTGCCTATTTCACTTACACGTCTCACACATTTAGAAGAACTTGACATTTCCAACAATCTTCTAGTCGGTTCCCTCCCTTTTAACATAGTTAAATTAACCAACTTACATGAGTTGCGGCTAAATAACAACTCCATCACTGGGAATATAATACCCTTGTTATTTAAAAGCCTATCCATTATCGACCTAAGTCACAACCTTATTAGTGGTGAAATAGAACCACTTATTCGACTTCCACTAGAGTTAAACTATGTGGATCTAAGCTACAATAAACTCACTGGAACAGTTCCCCGATTTCTCTTTAGTGTCGATTATGTGAACATTTCCTACAACTATTTGAAGGGTCCCATACCATATAGCGTCAGTCCTGATGCTTTGATAGGCAACAAGGATATGTGTAGTGACATTTTGTCTAACCAAATGCAATTCCAATTCCAGCCTTGTTCACCTCGCAACAAGACAAGTAACAAAGTAATGCGTAATTTAGCCATCGTTCTTCCTATCCTCATTTTTCTAATCCTAGCCTTCTCACTACTTGTGTGTTTGAAGCTTCGTCGCAAAGCAATTAACAACAAAACAATGACTAAGAATGGAGATATATTCTCTATATGGAACTATGATGGAAACATAGCATATGAAGACATCATCAGAGTAACAGAAGGCTTTGACATCAAGTATTGCATTGGAATGGGAGCATACGGAAGTGTTTACAAGGCACAATTACCTCATGGCAAGGTTGTTGCCTTGAAGAAACTCCATGGTTTTGAAGCAGAGGTGCCAACTTTGGATGAGAGTTTTAGGAACGAAGTTAGAGTATTATCAGAAATAAAGCATCGACATATTGTGAAACTTCATGGATTTTGCTTGCACAATAGAATCATGTTTTTGATCTATCAGTACATGGAGAAAGGAAGCTTGTTCTCTGTCTTGTATAATGATACAGAAGCAATGGAATTAGATTGGAGAAAAAGGGTTAACATTGTTAAAGGCATTGCACATGCTTTGTCATATCTTCATCATGATTGCAACCCTCCAATAGTGCATAGAGACATAGCTACGAGTAATATCTTACTTAACTCAGAGTGGGAGCCAAGTCTTTCTGACTTTGGCACAGCCAGACTTCTCCAACATGATTCATCCAATCGAACTATAGTTGCTGGAACCATTGGATATATAGCTCCGGAGCTTGCCTACACAATGGTTGTGAGTGAAAAGTGTGATGTCTATAGCTTTGGAGTAGTGGCACTTGAAACTTTAGTGGGGAAGCATCCTAAGGAAATATTGTCATCACTCGAATCAACATCAACTCATGACATAGCACTACGTGAAGTATTGGACCAACGCCTCCCACTGCCAAATATGTCAGTTTTAATTGACATAGTTCATGTTGCCATGGTAGCATTTGCATGCTTAAATCCCAATCCTAGCTCTCGGCCAACAATGAAACATGTGTCACAATGTTTTCTCACTCAACTAAAACCATTAAACTTTTCTTTGCGTGAAATTTCATTGCAGCAACTCATGAGTCAAGAAATAAGCATTATTTAG 2241 0.39 MRSFSVLNFYGPEIWIVFLLLLICGVMIQSASAAPSQLQLEANAILSSRWWDSDFNISDRCEWYGIACNKAGSITEINYGCNKVGVQLAALNLSAFQNLEKLIVTKCGLRGTIPPETGTLTKLTYLDLSSNSLEGEIPPSIGNLSLLQSLDFSNNDIQGSIPHELGFLKNLTLLSLPHNRINGILPISLTNLTRLEKLGISNNLLVGSLPSNLDELTNLHVLRLNNNFINGTLPISLTRLTHLEELDISNNLLVGSLPFNIVKLTNLHELRLNNNSITGNIIPLLFKSLSIIDLSHNLISGEIEPLIRLPLELNYVDLSYNKLTGTVPRFLFSVDYVNISYNYLKGPIPYSVSPDALIGNKDMCSDILSNQMQFQFQPCSPRNKTSNKVMRNLAIVLPILIFLILAFSLLVCLKLRRKAINNKTMTKNGDIFSIWNYDGNIAYEDIIRVTEGFDIKYCIGMGAYGSVYKAQLPHGKVVALKKLHGFEAEVPTLDESFRNEVRVLSEIKHRHIVKLHGFCLHNRIMFLIYQYMEKGSLFSVLYNDTEAMELDWRKRVNIVKGIAHALSYLHHDCNPPIVHRDIATSNILLNSEWEPSLSDFGTARLLQHDSSNRTIVAGTIGYIAPELAYTMVVSEKCDVYSFGVVALETLVGKHPKEILSSLESTSTHDIALREVLDQRLPLPNMSVLIDIVHVAMVAFACLNPNPSSRPTMKHVSQCFLTQLKPLNFSLREISLQQLMSQEISII. 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00599 746 SMART LRR_typ_2 264 288 IPR003591 -
Seca2g00599 746 SMART LRR_typ_2 168 191 IPR003591 -
Seca2g00599 746 SMART LRR_typ_2 192 216 IPR003591 -
Seca2g00599 746 SMART LRR_typ_2 240 261 IPR003591 -
Seca2g00599 746 SMART LRR_typ_2 120 144 IPR003591 -
Seca2g00599 746 ProSitePatterns Protein kinases ATP-binding region signature. 459 481 IPR017441 GO:0005524
Seca2g00599 746 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 416 531 - -
Seca2g00599 746 Gene3D Ribonuclease Inhibitor 35 161 IPR032675 -
Seca2g00599 746 FunFam Nuclear pore complex protein NUP107 31 186 - -
Seca2g00599 746 Gene3D Transferase(Phosphotransferase) domain 1 532 729 - -
Seca2g00599 746 PRINTS Leucine-rich repeat signature 123 136 - -
Seca2g00599 746 PRINTS Leucine-rich repeat signature 240 253 - -
Seca2g00599 746 Gene3D Ribonuclease Inhibitor 162 257 IPR032675 -
Seca2g00599 746 SUPERFAMILY L domain-like 61 345 - -
Seca2g00599 746 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 147 720 - -
Seca2g00599 746 Pfam Protein kinase domain 457 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00599 746 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Seca2g00599 746 ProSiteProfiles Protein kinase domain profile. 453 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00599 746 SMART LRR_sd22_2 168 189 - -
Seca2g00599 746 SMART LRR_sd22_2 120 146 - -
Seca2g00599 746 SMART LRR_sd22_2 286 308 - -
Seca2g00599 746 SMART LRR_sd22_2 192 215 - -
Seca2g00599 746 SMART LRR_sd22_2 240 269 - -
Seca2g00599 746 FunFam MDIS1-interacting receptor like kinase 2 532 725 - -
Seca2g00599 746 SUPERFAMILY Protein kinase-like (PK-like) 431 718 IPR011009 -
Seca2g00599 746 Gene3D Ribonuclease Inhibitor 258 373 IPR032675 -
Seca2g00599 746 SMART tyrkin_6 453 719 IPR020635 GO:0004713|GO:0006468
Seca2g00599 746 ProSiteProfiles Leucine-rich repeat profile. 288 310 IPR001611 GO:0005515
Seca2g00599 746 Gene3D Phosphorylase Kinase; domain 1 415 531 - -
Seca2g00599 746 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 187 281 - -
Seca2g00599 746 ProSitePatterns Tyrosine protein kinases specific active-site signature. 577 589 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00599 Seca-Chr2 8433612 8436085 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00599 99 625 Receptor kinase-like Gene Family AT4G08850 39.194 1.62e-119 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca2g00599 Pkinase 8.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00599 - - gmx:102666504 825.469