Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00593 ATGGGAAATCTTAGCCTATTACAAAACCTTGACATCTCTAACAACAACATTCAAAGCTCCATTCCTCATGAGTTGGGCTTCCTCAAAAATCTTACTTTATTAGATCTTTCACATAACAGAATCAATGGGACCTTGCCTATTTCACTTACGAGTCTCACCAGATTAAAAATGCTTGACATTTCCAACAATCTTCTTGTTGGTTCCCTCCCTTCACAGCTAAGATATTTGCCAAACACAACCTATTTGGATCTTAGCTACAATAAACTCACTCGACCGGTTCCCCAATATATCCATGCCTATTATGTGGTGTTTTCCTACAATAATTTGAAAGGTCCCATTCCAAATGGTTTCAATCCTTATGCCCTAATAGGCAACAAGGATGTTTGTAGCAACATTCCATATCCGCAACTCTATTTCCAATTCAAACCTTGTCCAGCAAGCAGCAAGACAACCATCAAAGTAATACTTGCCACAGTTCTTTCTGTCCTTATTTTTCGAATCCTAGCTTTCTCACTATGCATGTGTTTGAAGCTTCATTTCAAAGGAATTAAGAACAAACATGCAGAATCAACAACTAGGAATGGGGATATATTCTCTATATGGAACTATGATGGAAACATAGCATATGAAGACATCATCAGAGTGACACAAGACTTTGACATGAGATATTGCATTGGAACAGGAGCATATGGGAGTGTTTACAAGGCACAATTACCTAGTGGCAAGGTTGTTGCCTTAAAGAAACTACATGGTTTTGAAGCAGAGGTGCCAGCTTTGGATGAGAGTTTTAGAAATGAAGTGAGGGTATTATCAGAAATAAAGCATCGACATATTGTGAAGCTTTATGGATTCTGCTTGCACAATAGAATCATGTTTTTGATCTATCAATACATGGAGAAAGGTAGCTTGTTCTCTGTCTTGTATGATGATGCAGAAGCAATGGAATTGGATTGGAGAAAGAGGGTTGACATTGTCAAAGGCATTGCACATGCTTTGTCATATCTTCATCATGATTGCAACCCTCCAATAGTGCATAGAGACATAGCTACCACAAATATCTTACTTAACTCAGAGTGGCAGCCTAGTGTTGCGGACTTTGGCACAGCCAGACTCCTCCAACATGATTCATCAAATCAAACTATAGTTGCTGGAACCATTGGATATATAGCTCCGGAGCTTGCTTACACAATGGTTGTGAGTGAAAAGGGTGATGTTTATAGCTTTGGAGTAGTGGCACTTGAAACTTTAGTGGGAAAGCATCCTAAGGAAATATTGTCGTCACTTCAATCAACATCAACTCATGACATAGCACTATGTGAAGTACTGGACCAGCGCCTCCCACTACCAAATATGTCTGTTTTAACTGGCATAGTTCATGTTGCCATGATAGCATTTGCATGCTTAAATCCCAATCCTAGCTCTCGCCCAACAATGAAACATGTGTCACAATGTTTTCTTAGTCGATTAACTGTACTAAGCATTCCTTTACATGAAATTTCTATGCGGCAACTCATGAGTCAAGAACTCAAGCACTATTTAGAATTTTGA 1548 0.3895 MGNLSLLQNLDISNNNIQSSIPHELGFLKNLTLLDLSHNRINGTLPISLTSLTRLKMLDISNNLLVGSLPSQLRYLPNTTYLDLSYNKLTRPVPQYIHAYYVVFSYNNLKGPIPNGFNPYALIGNKDVCSNIPYPQLYFQFKPCPASSKTTIKVILATVLSVLIFRILAFSLCMCLKLHFKGIKNKHAESTTRNGDIFSIWNYDGNIAYEDIIRVTQDFDMRYCIGTGAYGSVYKAQLPSGKVVALKKLHGFEAEVPALDESFRNEVRVLSEIKHRHIVKLYGFCLHNRIMFLIYQYMEKGSLFSVLYDDAEAMELDWRKRVDIVKGIAHALSYLHHDCNPPIVHRDIATTNILLNSEWQPSVADFGTARLLQHDSSNQTIVAGTIGYIAPELAYTMVVSEKGDVYSFGVVALETLVGKHPKEILSSLQSTSTHDIALCEVLDQRLPLPNMSVLTGIVHVAMIAFACLNPNPSSRPTMKHVSQCFLSRLTVLSIPLHEISMRQLMSQELKHYLEF. 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00593 515 SUPERFAMILY Protein kinase-like (PK-like) 198 483 IPR011009 -
Seca2g00593 515 ProSiteProfiles Protein kinase domain profile. 219 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00593 515 PRINTS Leucine-rich repeat signature 31 44 - -
Seca2g00593 515 PRINTS Leucine-rich repeat signature 52 65 - -
Seca2g00593 515 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 182 297 - -
Seca2g00593 515 FunFam MDIS1-interacting receptor like kinase 2 298 491 - -
Seca2g00593 515 SUPERFAMILY L domain-like 2 119 - -
Seca2g00593 515 ProSitePatterns Tyrosine protein kinases specific active-site signature. 343 355 IPR008266 GO:0004672|GO:0006468
Seca2g00593 515 ProSitePatterns Protein kinases ATP-binding region signature. 225 247 IPR017441 GO:0005524
Seca2g00593 515 SMART tyrkin_6 219 485 IPR020635 GO:0004713|GO:0006468
Seca2g00593 515 Gene3D Transferase(Phosphotransferase) domain 1 298 491 - -
Seca2g00593 515 Pfam Protein kinase domain 225 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00593 515 Gene3D Phosphorylase Kinase; domain 1 181 297 - -
Seca2g00593 515 PANTHER LEUCINE RICH REPEAT KINASE 2 1 487 - -
Seca2g00593 515 ProSiteProfiles Leucine-rich repeat profile. 30 53 IPR001611 GO:0005515
Seca2g00593 515 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 93 - -
Seca2g00593 515 Gene3D Ribonuclease Inhibitor 1 151 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00593 Seca-Chr2 8368165 8369947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00593 4 391 Receptor kinase-like Gene Family AT4G08850 43.243 3.71e-102 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca2g00593 Pkinase 3.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00593 - - gmx:102661105 708.368