Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00578 ATGGTCCCAACACTGATCAACTGTGTCAGTCTGTCTGTCAGGTTTGATAACTGCCCTCTATTTATTCCTATCCAATCCCCACTCCATTTCCACAAACAACCCCTTTCAAGGAAAATGGCTCTTCTTGGATTTCTTCTTCTGGGATTTTTCTCCTTGGTGTCACATGTAAAAGGGTATGGTGGGGGTTGGATCAATGCTCATGCCACTTTCTATGGTGGAAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGAAACCTATATAGCCAAGGTTATGGAACTAATACAGCAGCACTGAGCACTGCCCTTTTCAATAATGGCTTAAGCTGTGGTGCATGTTTTGAAATTAAATGTGTGAATGACCCACAATGGTGTCTTCCTGGCTCTATTGTAGTTACTGCCACTAATTTTTGCCCACCTGGTGGTTGGTGTGACCCTCCCAATCACCATTTTGATCTTTCACAACCTATTTTCCAGCACATTGCTCAATATAAGGCTGGGATTGTACCTGTAGCATACAGAAGGGTGAGGTGCAGGAGAAAAGGTGGAATCAGGTTCACCATCAATGGCCATTCTTACTTCAATTTAGTCCTTGTGACTAATGTTGGAGGTGCTGGTGATGTGCATGCTGTGTCCATCAAAGGTTCAAGGACTAGATGGCAAGCAATGTCAAGGAACTGGGGGCAAAATTGGCAGAGCAATTCCTACCTAAATGGACAGAGTCTTTCCTTTGTAGTCACCACCAGTAATGGCCACAGTGTGGTCTCATACAATGCTGCCCCAGCTAGTTGGTCCTTTGGCCAGACATACACTGGGAGGCAGTTCAACTACTAA 840 0.4536 MVPTLINCVSLSVRFDNCPLFIPIQSPLHFHKQPLSRKMALLGFLLLGFFSLVSHVKGYGGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDPQWCLPGSIVVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYKAGIVPVAYRRVRCRRKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVSIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNAAPASWSFGQTYTGRQFNY. 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00578 279 PANTHER EXPANSIN-A15 45 277 IPR002963 GO:0009664
Seca2g00578 279 Pfam Lytic transglycolase 98 175 IPR009009 -
Seca2g00578 279 Pfam Expansin C-terminal domain 186 263 IPR007117 -
Seca2g00578 279 FunFam Expansin 185 277 - -
Seca2g00578 279 SUPERFAMILY PHL pollen allergen 182 274 IPR036749 -
Seca2g00578 279 PRINTS Expansin signature 143 160 IPR002963 GO:0009664
Seca2g00578 279 PRINTS Expansin signature 231 252 IPR002963 GO:0009664
Seca2g00578 279 PRINTS Expansin signature 120 131 IPR002963 GO:0009664
Seca2g00578 279 PRINTS Expansin signature 196 217 IPR002963 GO:0009664
Seca2g00578 279 PRINTS Expansin signature 260 276 IPR002963 GO:0009664
Seca2g00578 279 PRINTS Expansin signature 184 196 IPR002963 GO:0009664
Seca2g00578 279 PRINTS Expansin signature 132 142 IPR002963 GO:0009664
Seca2g00578 279 PRINTS Expansin signature 160 173 IPR002963 GO:0009664
Seca2g00578 279 PRINTS Expansin signature 93 107 IPR002963 GO:0009664
Seca2g00578 279 SMART dpbb_1 98 175 IPR007112 -
Seca2g00578 279 CDD DPBB_EXPA_N 62 180 - -
Seca2g00578 279 Gene3D - 185 277 IPR036749 -
Seca2g00578 279 Gene3D - 51 181 IPR036908 -
Seca2g00578 279 SUPERFAMILY Barwin-like endoglucanases 47 203 IPR036908 -
Seca2g00578 279 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 81 185 IPR007112 -
Seca2g00578 279 PRINTS Expansin/Lol pI family signature 62 77 IPR007118 GO:0005576
Seca2g00578 279 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576
Seca2g00578 279 PRINTS Expansin/Lol pI family signature 168 184 IPR007118 GO:0005576
Seca2g00578 279 PRINTS Expansin/Lol pI family signature 102 120 IPR007118 GO:0005576
Seca2g00578 279 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Seca2g00578 279 PRINTS Expansin/Lol pI family signature 260 274 IPR007118 GO:0005576
Seca2g00578 279 FunFam Expansin 53 181 - -
Seca2g00578 279 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 195 274 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00578 Seca-Chr2 8171624 8173058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00578 38 277 Expansin Gene Family AT2G03090 79.032 9.32e-145 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00578 K20628 - gmx:100791784 491.5