Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00573 ATGGGAACAGTGGAGAATGTATCTAGACCTAGAATGGAAGATCAACAGTTGAAACTGCCACCTGGATTTAGATTTCATCCAACAGATGAAGAGCTCATAAATGATTACCTCGTTAAAAAGGTTATTGACAACTCCTTCTATGCTATAGCAATTGCTGAAGTTGATTTGAACAAGTGTGAGCCATGGGATTTGCCTGGGTTTGCTAATATGGGTGAAACAGAATGGTACTTTTTTAATGTGAGGGATAGAAAATACCCAACTGGTTTAAGGACAAATAGAGCCACTGATGCTGGCTACTGGAAGGCCACAGGCAAAGACAGGGAGATATTCGCGGCAAATGCCTTGATTGGGGTGAAGAAAACACTAGTTTTCTACAAAGGAAGAGCTCCAAAAGGTGGAAAAACCAACTGGATAATGCATGAATATAGATTGGAGGGTAAAAATTCTGAATATAATCTCGCTAGACTTGGAAAGGTATTAACTTTTTTTTCTAGAGAATGGGTTATTAGCAGAGTATTTGAAAAGAGTACTTGTGTAAAGAAAATGCATGTTCCAAACTTTGGAAGGTTCGACACCTTTGGAGACGAACTATCACCTCCTTCTCAATTGATTCCATTGACGGATTTTTCTCCGTACAACAACATAACAAGAACAACCGCAGGTGATTTGTCTCAAATGATCAACTTCTCCTATCCAAATCAAATGGAGGATCAGAGAGGACAAGATGACATTGTTGATAGCATGGAAGCTCCTATTTTAGCCTTTCAATCTTCAGGACCCTATGATATTTCCCCTTATGCTAAACCAACCCCTGCATTCTCCAACCATTCCACAATGATTGCACAACAAATTGGCCAACCACAGTATCCTGCTTATTCTCTGCCTCAAGAACAACCCGAGTTAAGGATGCTAGCGGAAAATCCTGGATCGAGTTTACAACACATTCAAAAAATAGATTTTTCTCTCGGAACAGACTTTAATGCTGATATCTCCCCTGTTACAACTAACAATGACATGTTTCAAAGGTGGTTTGGGAATCAAGAACATGCATCAACTTCTACAGGGCCGGTGGACATTGATTACTTGTGGAATTACTAA 1098 0.3971 MGTVENVSRPRMEDQQLKLPPGFRFHPTDEELINDYLVKKVIDNSFYAIAIAEVDLNKCEPWDLPGFANMGETEWYFFNVRDRKYPTGLRTNRATDAGYWKATGKDREIFAANALIGVKKTLVFYKGRAPKGGKTNWIMHEYRLEGKNSEYNLARLGKVLTFFSREWVISRVFEKSTCVKKMHVPNFGRFDTFGDELSPPSQLIPLTDFSPYNNITRTTAGDLSQMINFSYPNQMEDQRGQDDIVDSMEAPILAFQSSGPYDISPYAKPTPAFSNHSTMIAQQIGQPQYPAYSLPQEQPELRMLAENPGSSLQHIQKIDFSLGTDFNADISPVTTNNDMFQRWFGNQEHASTSTGPVDIDYLWNY. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00573 365 Gene3D NAC domain 28 179 IPR036093 GO:0003677|GO:0006355
Seca2g00573 365 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 271 - -
Seca2g00573 365 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Seca2g00573 365 SUPERFAMILY NAC domain 15 175 IPR036093 GO:0003677|GO:0006355
Seca2g00573 365 ProSiteProfiles NAC domain profile. 19 175 IPR003441 GO:0003677|GO:0006355
Seca2g00573 365 FunFam NAC domain-containing protein 100-like 28 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00573 Seca-Chr2 8108269 8109553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00573 17 365 NAC Transcription Factor Family AT5G07680 47.025 1.75e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca2g00573 NAM 6.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00573 - - gmx:100782172 452.21